Browse Element(s) Details


Os.8454.1.S1_at

Description gb:AK121000.1
DB_XREF= gi:37990623
TID=Os.8454.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044K19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044K19, full insert sequence.
FL= gb:AK121000.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2181011/11histidine kinase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21760NANA10+10835850..10836164retrotransposon protein, putative, unclassified
LOC_Os10g21770OsAffx.30488.1.S1_at10/1110+10839169..10840342hypothetical protein
LOC_Os10g21780OsAffx.18336.1.S1_at11/1110+10841770..10842108hypothetical protein
LOC_Os10g21790Os.46695.1.S1_at8/1110+10854246..10854892TMV-induced protein I, putative, expressed
LOC_Os10g21800OsAffx.30489.1.S1_at11/1110+10855596..10857201Leucine Rich Repeat family protein, expressed
LOC_Os10g21810Os.8454.1.S1_at11/1110+10860937..10871684histidine kinase 3, putative, expressed
LOC_Os10g21810Os.8454.1.S1_s_at3/1110+10860937..10871684histidine kinase 3, putative, expressed
LOC_Os10g21820OsAffx.29376.1.S1_x_at1/1110+10880243..10881772hypothetical protein
LOC_Os10g21830OsAffx.20387.1.S1_x_at1/1110+10889889..10891523transposon protein, putative, unclassified
LOC_Os10g21840NANA10+10891763..10894845retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g21850OsAffx.24866.1.S1_at11/1110+10895929..10902565retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009736biological_processcytokinin mediated signaling
GO:0004673molecular_functionprotein histidine kinase activity
GO:0009884molecular_functioncytokinin receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8454.1.S1_at--788--8031Chr10:10861937..10861961 (25 bp)
GGAGATTTAGTTTGCTAGTGGCCAC
LOC_Os10g21810
Os.8454.1.S1_at--554--6051Chr10:10861936..10861960 (25 bp)
GAGATTTAGTTTGCTAGTGGCCACA
LOC_Os10g21810
Os.8454.1.S1_at--782--6531Chr10:10861934..10861958 (25 bp)
GATTTAGTTTGCTAGTGGCCACAGT
LOC_Os10g21810
Os.8454.1.S1_at--503--10351Chr10:10861932..10861956 (25 bp)
TTTAGTTTGCTAGTGGCCACAGTGA
LOC_Os10g21810
Os.8454.1.S1_at--738--10051Chr10:10861930..10861954 (25 bp)
TAGTTTGCTAGTGGCCACAGTGATT
LOC_Os10g21810
Os.8454.1.S1_at--691--10071Chr10:10861922..10861946 (25 bp)
TAGTGGCCACAGTGATTCAGGGTTC
LOC_Os10g21810
Os.8454.1.S1_at--670--7551Chr10:10861920..10861944 (25 bp)
GTGGCCACAGTGATTCAGGGTTCTC
LOC_Os10g21810
Os.8454.1.S1_at--771--8451Chr10:10861919..10861943 (25 bp)
TGGCCACAGTGATTCAGGGTTCTCT
LOC_Os10g21810
Os.8454.1.S1_at--863--4391Chr10:10861917..10861941 (25 bp)
GCCACAGTGATTCAGGGTTCTCTGA
LOC_Os10g21810
Os.8454.1.S1_at--676--3311Chr10:10861915..10861939 (25 bp)
CACAGTGATTCAGGGTTCTCTGATG
LOC_Os10g21810
Os.8454.1.S1_at--773--1111Chr10:10861912..10861936 (25 bp)
AGTGATTCAGGGTTCTCTGATGCAG
LOC_Os10g21810
Target Sequence 
GGAGATTTAGTTTGCTAGTGGCCACAGTGATTCAGGGTTCTCTGATGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis