Browse Element(s) Details


Os.46695.1.S1_at

Description gb:NM_196040.1
DB_XREF= gi:37533439
TID=Os.46695.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46695 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative elicitor inducible protein (OSJNBa0073L01.4), mRNA.
PROD=putative elicitor inducible protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g217908/11TMV-induced protein I, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21760NANA10+10835850..10836164retrotransposon protein, putative, unclassified
LOC_Os10g21770OsAffx.30488.1.S1_at10/1110+10839169..10840342hypothetical protein
LOC_Os10g21780OsAffx.18336.1.S1_at11/1110+10841770..10842108hypothetical protein
LOC_Os10g21790Os.46695.1.S1_at8/1110+10854246..10854892TMV-induced protein I, putative, expressed
LOC_Os10g21800OsAffx.30489.1.S1_at11/1110+10855596..10857201Leucine Rich Repeat family protein, expressed
LOC_Os10g21810Os.8454.1.S1_at11/1110+10860937..10871684histidine kinase 3, putative, expressed
LOC_Os10g21810Os.8454.1.S1_s_at3/1110+10860937..10871684histidine kinase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46695.1.S1_at--676--4411Chr10:10854312..10854336 (25 bp)
GCCACCACACGATGCACGTTCGAGA
LOC_Os10g21790
Os.46695.1.S1_at--945--4051Chr10:10854321..10854345 (25 bp)
CGATGCACGTTCGAGATCGTCGTCA
LOC_Os10g21790
Os.46695.1.S1_at--751--1751Chr10:10854549..10854573 (25 bp)
ACCTCCGACGGCTCTGGGAACAAGC
LOC_Os10g21790
Os.46695.1.S1_at--96--4151Chr10:10854722..10854746 (25 bp)
CGCGGCGGCACCATGATTGGTTGAA
LOC_Os10g21790
Os.46695.1.S1_at--73--6611NONE
GATTGGTTGAACGATCCACCTATAG
NONE
Os.46695.1.S1_at--103--8991NONE
TGAACGATCCACCTATAGCTCCATG
NONE
Os.46695.1.S1_at--307--10191Chr10:10854756..10854780 (25 bp)
TATAGCTCCATGTCAATCACCAGTG
LOC_Os10g21790
Os.46695.1.S1_at--298--9671Chr10:10854772..10854796 (25 bp)
TCACCAGTGCTGTAGTAACCTAAAT
LOC_Os10g21790
Os.46695.1.S1_at--980--5231Chr10:10854797..10854821 (25 bp)
GAATAAATAAGTTGGGCACAGCTAG
LOC_Os10g21790
Os.46695.1.S1_at--511--8651Chr10:10854809..10854833 (25 bp)
TGGGCACAGCTAGTGTATATGCTTT
LOC_Os10g21790
Os.46695.1.S1_at--362--11NONE
CCTACTGTAACGTGATGGAAATAAG
NONE
Target Sequence 
GCCACCACACGATGCACGTTCGAGATCGTCGTCAAGACCGACGGCCGGAGGAACGCCGGCACCGACGCCCGCGTCTCGCT
GCAGGTGCGCGCCGCCAGGGGCCCGACGCTGACGGTCGCCAACCTGGAGTCGTGGGGCCAGATGGCCGCCGGCCACGACT
ACTTCGAGAAGGGGAACCTCGACCGGTTCAGGGGCGCCGGCGACTGCATGCCGTCGGAGCCCTGCAACATGGTGCTCACC
TCCGACGGCTCTGGGAACAAGCCCGGGTGGTACGTGAGCTACGTGATGGTGACGCAGCTCGGGCAGGGGAGACTCCCGTC
GATGACGCACCGGTGGGCGGTGGATCAGTGGCTGGCCATCGACGAGGCGCCGCACATGCTCACCGCCGAGCGGAGGGGCT
GCGGCATTGGCGCGGCGGCACCATGATTGGTTGAACGATCCACCTATAGCTCCATGTCAATCACCAGTGCTGTAGTAACC
TAAATGAATAAATAAGTTGGGCACAGCTAGTGTATATGCTTTGCCTACTGTAACGTGATGGAAATAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis