Browse Element(s) Details


OsAffx.30489.1.S1_at

Description tigr:9638.m01829
TID=OsAffx.30489.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2180011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21760NANA10+10835850..10836164retrotransposon protein, putative, unclassified
LOC_Os10g21770OsAffx.30488.1.S1_at10/1110+10839169..10840342hypothetical protein
LOC_Os10g21780OsAffx.18336.1.S1_at11/1110+10841770..10842108hypothetical protein
LOC_Os10g21790Os.46695.1.S1_at8/1110+10854246..10854892TMV-induced protein I, putative, expressed
LOC_Os10g21800OsAffx.30489.1.S1_at11/1110+10855596..10857201Leucine Rich Repeat family protein, expressed
LOC_Os10g21810Os.8454.1.S1_at11/1110+10860937..10871684histidine kinase 3, putative, expressed
LOC_Os10g21810Os.8454.1.S1_s_at3/1110+10860937..10871684histidine kinase 3, putative, expressed
LOC_Os10g21820OsAffx.29376.1.S1_x_at1/1110+10880243..10881772hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30489.1.S1_at--639--5871Chr10:10856160..10856184 (25 bp)
GAGATCCCTCAATCCTTTGGTAATA
LOC_Os10g21800
OsAffx.30489.1.S1_at--455--571Chr10:10856171..10856195 (25 bp)
ATCCTTTGGTAATATGCATCACCTG
LOC_Os10g21800
OsAffx.30489.1.S1_at--1159--4271Chr10:10856192..10856216 (25 bp)
CCTGCAAATCATATACTTGAGCAAT
LOC_Os10g21800
OsAffx.30489.1.S1_at--437--9011Chr10:10856224..10856248 (25 bp)
TGCAAAGAAGGATGCCTAATCTTGC
LOC_Os10g21800
OsAffx.30489.1.S1_at--615--5151Chr10:10856339..10856363 (25 bp)
GCAACTTTCAGTTAACAGTCTTACT
LOC_Os10g21800
OsAffx.30489.1.S1_at--1113--3531Chr10:10856369..10856393 (25 bp)
CATCCCTGTTTCTGTTGCCAAAATT
LOC_Os10g21800
OsAffx.30489.1.S1_at--262--9011Chr10:10856456..10856480 (25 bp)
TGCAAAGTTGCCTGGTTTAGTATAC
LOC_Os10g21800
OsAffx.30489.1.S1_at--78--2011Chr10:10856926..10856950 (25 bp)
ACTCAACGGCAGTACATACACTGAT
LOC_Os10g21800
OsAffx.30489.1.S1_at--619--331Chr10:10856941..10856965 (25 bp)
ATACACTGATACACATGGGATTAAA
LOC_Os10g21800
OsAffx.30489.1.S1_at--1147--3431Chr10:10856967..10856991 (25 bp)
CAGTTCTTAGGATCAATTCCTTCTG
LOC_Os10g21800
OsAffx.30489.1.S1_at--869--2291Chr10:10857047..10857071 (25 bp)
AAATGTGATTCCACGCAGCGGCGGC
LOC_Os10g21800
Target Sequence 
GAGATCCCTCAATCCTTTGGTAATATGCATCACCTGCAAATCATATACTTGAGCAATAACACATTGCAAAGAAGGATGCC
TAATCTTGCAAACTGTTCCAACCTCAAGGTGCTATGGCTGAATGGAAACAATCTGGTAGGACAAATCCCTGCAGATTTGC
CTCAACGCTTTCAAAGCTTGCAACTTTCAGTTAACAGTCTTACTGGACCCATCCCTGTTTCTGTTGCCAAAATTACAACG
CTGAAAAGGTTTAGTTGTCTGTATAATAACATCGATGGCAGCATACCAAATGATTTTGCAAAGTTGCCTGGTTTAGTATA
CTTGCATCTGGGTGCAAAAATAATTGGCAGGCAATGTGCCAAATTCTTTTGGAAACCATTCCACTCAACGGCAGTACATA
CACTGATACACATGGGATTAAATCAGTTCTTAGGATCAATTCCTTCTGGTATAGCAAACATTCCCAACTTGATTGCTTTA
GAATTGGGTGGTAATCTGTTTACAAATGTGATTCCACGCAGCGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis