Browse Element(s) Details


OsAffx.18336.1.S1_at

Description tigr:9638.m01827
TID=OsAffx.18336.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2178011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21720OsAffx.6724.2.S1_s_at11/1110+10815682..10818181hypothetical protein
LOC_Os10g21720OsAffx.6724.1.S1_at9/1110+10815682..10818181hypothetical protein
LOC_Os10g21720OsAffx.6724.2.S1_at2/1110+10815682..10818181hypothetical protein
LOC_Os10g21730NANA10+10821625..10825275retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21740OsAffx.30487.1.S1_at11/1110+10827099..10828556hypothetical protein
LOC_Os10g21760NANA10+10835850..10836164retrotransposon protein, putative, unclassified
LOC_Os10g21770OsAffx.30488.1.S1_at10/1110+10839169..10840342hypothetical protein
LOC_Os10g21780OsAffx.18336.1.S1_at11/1110+10841770..10842108hypothetical protein
LOC_Os10g21790Os.46695.1.S1_at8/1110+10854246..10854892TMV-induced protein I, putative, expressed
LOC_Os10g21800OsAffx.30489.1.S1_at11/1110+10855596..10857201Leucine Rich Repeat family protein, expressed
LOC_Os10g21810Os.8454.1.S1_at11/1110+10860937..10871684histidine kinase 3, putative, expressed
LOC_Os10g21810Os.8454.1.S1_s_at3/1110+10860937..10871684histidine kinase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18336.1.S1_at--70--9351Chr10:10841848..10841872 (25 bp)
TCGCTGTTTTGCAGCGGTAGTGCTT
LOC_Os10g21780
OsAffx.18336.1.S1_at--177--4251Chr10:10841880..10841904 (25 bp)
CCGGAGAACCACCAGTTGGAGAGTG
LOC_Os10g21780
OsAffx.18336.1.S1_at--824--5071Chr10:10841921..10841945 (25 bp)
GCACCAAAGAGGATAGATGCCTATT
LOC_Os10g21780
OsAffx.18336.1.S1_at--477--1291Chr10:10841935..10841959 (25 bp)
AGATGCCTATTGCAGCATTGGAGTG
LOC_Os10g21780
OsAffx.18336.1.S1_at--667--2891Chr10:10841978..10842002 (25 bp)
AAGGTGGAGGCAATGTCCGCATCGA
LOC_Os10g21780
OsAffx.18336.1.S1_at--2--5191Chr10:10841987..10842011 (25 bp)
GCAATGTCCGCATCGATGACGGCAA
LOC_Os10g21780
OsAffx.18336.1.S1_at--499--671Chr10:10842002..10842026 (25 bp)
ATGACGGCAACACCCTCCTTATTGT
LOC_Os10g21780
OsAffx.18336.1.S1_at--602--2451Chr10:10842010..10842034 (25 bp)
AACACCCTCCTTATTGTTGTCGCGG
LOC_Os10g21780
OsAffx.18336.1.S1_at--238--9231Chr10:10842017..10842041 (25 bp)
TCCTTATTGTTGTCGCGGCGTCCAT
LOC_Os10g21780
OsAffx.18336.1.S1_at--962--8351Chr10:10842033..10842057 (25 bp)
GGCGTCCATGGCTATGCCCTTGCAT
LOC_Os10g21780
OsAffx.18336.1.S1_at--1091--851Chr10:10842040..10842064 (25 bp)
ATGGCTATGCCCTTGCATAGCCACG
LOC_Os10g21780
Target Sequence 
TCGCTGTTTTGCAGCGGTAGTGCTTGGGAGGGCCGGAGAACCACCAGTTGGAGAGTGGATGATGGCAGTGATGGCACCAA
AGAGGATAGATGCCTATTGCAGCATTGGAGTGGGGAGGACTGGTTGAGGGAAGGTGGAGGCAATGTCCGCATCGATGACG
GCAACACCCTCCTTATTGTTGTCGCGGCGTCCATGGCTATGCCCTTGCATAGCCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis