Browse Element(s) Details


OsAffx.6724.1.S1_at

Description gb:NM_196037.1
DB_XREF= gi:37533433
TID=OsAffx.6724.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0058E19.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g217209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21700OsAffx.20453.1.S1_at7/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21700Os.6812.1.S1_at5/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21700Os.52530.1.S1_at1/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21710OsAffx.30486.1.S1_at10/1110+10798197..10801548hypothetical protein
LOC_Os10g21710OsAffx.11259.1.S1_at1/1110+10798197..10801548hypothetical protein
LOC_Os10g21720OsAffx.6724.2.S1_s_at11/1110+10815682..10818181hypothetical protein
LOC_Os10g21720OsAffx.6724.1.S1_at9/1110+10815682..10818181hypothetical protein
LOC_Os10g21720OsAffx.6724.2.S1_at2/1110+10815682..10818181hypothetical protein
LOC_Os10g21730NANA10+10821625..10825275retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21740OsAffx.30487.1.S1_at11/1110+10827099..10828556hypothetical protein
LOC_Os10g21760NANA10+10835850..10836164retrotransposon protein, putative, unclassified
LOC_Os10g21770OsAffx.30488.1.S1_at10/1110+10839169..10840342hypothetical protein
LOC_Os10g21780OsAffx.18336.1.S1_at11/1110+10841770..10842108hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6724.1.S1_at--903--9051Chr10:10818021..10818053 (25 bp)
TGCTTGGATTGGGTGGCAAGAACAA
LOC_Os10g21720
OsAffx.6724.1.S1_at--649--7512Chr10:10818009..10818031 (23 bp)
GTGGCAAGAACAACGTACTTCAGAA
LOC_Os10g21720
OsAffx.6724.1.S1_at--814--5491Chr10:10818002..10818026 (25 bp)
GAACAACGTACTTCAGAACTTTCTA
LOC_Os10g21720
OsAffx.6724.1.S1_at--791--7011Chr10:10817995..10818019 (25 bp)
GTACTTCAGAACTTTCTATTCAATG
LOC_Os10g21720
OsAffx.6724.1.S1_at--542--9651Chr10:10817990..10818014 (25 bp)
TCAGAACTTTCTATTCAATGTATAA
LOC_Os10g21720
OsAffx.6724.1.S1_at--484--2991NONE
AATGTATAAACGACACCTCTGCGAA
NONE
OsAffx.6724.1.S1_at--47--351NONE
ATAAACGACACCTCTGCGAACGTCT
NONE
OsAffx.6724.1.S1_at--498--5831Chr10:10816213..10816237 (25 bp)
GACCTCATCGTGGTAAAGCCTCCGT
LOC_Os10g21720
OsAffx.6724.1.S1_at--305--9611Chr10:10816209..10816233 (25 bp)
TCATCGTGGTAAAGCCTCCGTTTTA
LOC_Os10g21720
OsAffx.6724.1.S1_at--1014--2531Chr10:10816178..10816202 (25 bp)
AACTCGTCCCTCTTTCTCAAAGGAT
LOC_Os10g21720
OsAffx.6724.1.S1_at--1095--9391Chr10:10816175..10816199 (25 bp)
TCGTCCCTCTTTCTCAAAGGATTTC
LOC_Os10g21720
Target Sequence 
TGCTTGGATTGGGTGGCAAGAACAACGTACTTCAGAACTTTCTATTCAATGTATAAACGACACCTCTGCGAACGTCTATG
CCATCGTGGCCGTGGTCTCCAAGGCCACCAGCACGCCAGCACGTCCACTGCCATTGCGCCTGCCGCTGCTGTGCTGCCTC
CCTCCGGCAAGGACCTCAAGAACTTGGACGCCGACTTCGTCAAGCAGGCCACCCTCTTCGACCTCATCGTGGTAAAGCCT
CCGTTTTACCTCTCAACTCGTCCCTCTTTCTCAAAGGATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis