Browse Element(s) Details


Os.52530.1.S1_at

Description gb:AK067692.1
DB_XREF= gi:32977710
TID=Os.52530.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52530 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118F01, full insert sequence.
FL= gb:AK067692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1922011/11Thioredoxin-like protein 4B, putative, expressed
LOC_Os10g217001/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19180NANA11+10933699..10933920hypothetical protein
LOC_Os11g19190Os.26886.3.S1_x_at7/1111+10939788..10943136transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19190Os.26886.1.S1_x_at7/1111+10939788..10943136transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19200Os.26886.2.S1_s_at7/1111+10944825..10947940transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19200Os.26886.6.S1_s_at7/1111+10944825..10947940transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19200OsAffx.16467.1.S1_at7/1111+10944825..10947940transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19210Os.56337.1.S1_at11/1111+10950335..10956302Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os11g19220Os.52530.1.S1_at11/1111+10955801..10959863Thioredoxin-like protein 4B, putative, expressed
LOC_Os11g19230OsAffx.19542.3.S1_x_at2/1111+10970026..10975183retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g19240OsAffx.31056.1.S1_at11/1111+10976625..10978317amino acid transporter family protein, putative
LOC_Os11g19240OsAffx.31056.1.S1_x_at11/1111+10976625..10978317amino acid transporter family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0007067biological_processmitosis
GO:0005634cellular_componentnucleus
GO:0005681cellular_componentspliceosome complex
GO:0005737cellular_componentcytoplasm
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52530.1.S1_at--424--10372Chr10:10796364..10796825 (25 bp)
TTTTTTCTTCAATGCCCAACACATG
LOC_Os10g21700
Os.52530.1.S1_at--117--3471Chr11:10957876..10957897 (22 bp)
CAGGGACACCTGATCACACAAAATG
LOC_Os11g19220
Os.52530.1.S1_at--88--2311Chr11:10957856..10957880 (25 bp)
AAATGGATTGGCTCTTTCAGCAGCA
LOC_Os11g19220
Os.52530.1.S1_at--429--2391Chr11:10956751..10956775 (25 bp)
AAACTGATTGTTTCTTGCCCACTTC
LOC_Os11g19220
Os.52530.1.S1_at--967--6011Chr11:10956721..10956745 (25 bp)
GAGAGGATACCCAAATTCCAGCTCC
LOC_Os11g19220
Os.52530.1.S1_at--646--2311Chr11:10956673..10956697 (25 bp)
AAAGTGCTCATCACATGCGCATGCT
LOC_Os11g19220
Os.52530.1.S1_at--314--8691Chr11:10956494..10956518 (25 bp)
TGTGAAGATCTCGTCTCTCCAATTG
LOC_Os11g19220
Os.52530.1.S1_at--286--9491Chr11:10956479..10956503 (25 bp)
TCTCCAATTGGTTTGTCTCGACTAC
LOC_Os11g19220
Os.52530.1.S1_at--846--911Chr11:10956409..10956433 (25 bp)
AGGCATGGTAGCTTTTGTTCTGTAC
LOC_Os11g19220
Os.52530.1.S1_at--639--8791Chr11:10956394..10956418 (25 bp)
TGTTCTGTACTTCTATAGGAGGCAA
LOC_Os11g19220
Os.52530.1.S1_at--352--3511Chr11:10956338..10956362 (25 bp)
CATGGTGCCGCATAGTAAGCTTTTA
LOC_Os11g19220
Target Sequence 
TTTTTTCTTCAATGCCCAACACATGAAGATGGACTCAGGGACACCTGATCACACAAAATGGATTGGCTCTTTCAGCAGCA
AGCAAGATTTCATTGATGTAGTTGAGGCAATATTTAGGGGTGCGATGAAAGGTAAACTGATTGTTTCTTGCCCACTTCCA
CCAGAGAGGATACCCAAATTCCAGCTCCTTTTCAANGATGTTTGAGCAAGGAAAGTGCTCATCACATGCGCATGCTAAAA
GAGTGTCTTGGTCATGATGACAGAACTATATGAAGCTATGTTCAGGCAGAAGAGTTTGTGAAGATCTCGTCTCTCCAATT
GGTTTGTCTCGACTACTTTCATTTATGTAGTAGTATATCACATGCTGTGTTGATATGTACCAGGCATGGTAGCTTTTGTT
CTGTACTTCTATAGGAGGCAAACTGAATCGATCAAGAAAAGTGCATATCTGACATGGTGCCGCATAGTAAGCTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis