Browse Element(s) Details


Os.56337.1.S1_at

Description gb:AK109882.1
DB_XREF= gi:32995091
TID=Os.56337.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-D05, full insert sequence.
FL= gb:AK109882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1921011/11Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os01g079601/11Phospholipase/Carboxylesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19170OsAffx.31055.1.S1_at10/1111+10925903..10926280hypothetical protein
LOC_Os11g19180NANA11+10933699..10933920hypothetical protein
LOC_Os11g19190Os.26886.3.S1_x_at7/1111+10939788..10943136transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19190Os.26886.1.S1_x_at7/1111+10939788..10943136transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19200Os.26886.2.S1_s_at7/1111+10944825..10947940transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19200Os.26886.6.S1_s_at7/1111+10944825..10947940transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19200OsAffx.16467.1.S1_at7/1111+10944825..10947940transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19210Os.56337.1.S1_at11/1111+10950335..10956302Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os11g19220Os.52530.1.S1_at11/1111+10955801..10959863Thioredoxin-like protein 4B, putative, expressed
LOC_Os11g19230OsAffx.19542.3.S1_x_at2/1111+10970026..10975183retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g19240OsAffx.31056.1.S1_at11/1111+10976625..10978317amino acid transporter family protein, putative
LOC_Os11g19240OsAffx.31056.1.S1_x_at11/1111+10976625..10978317amino acid transporter family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56337.1.S1_at--644--2091Chr11:10955861..10955885 (25 bp)
ACATCAGGTTTGACATCAGCCCATG
LOC_Os11g19210
Os.56337.1.S1_at--341--4331Chr11:10955881..10955905 (25 bp)
CCATGTGAGCACTTCAGCAGGGTAA
LOC_Os11g19210
Os.56337.1.S1_at--39--7811Chr11:10955936..10955960 (25 bp)
GGTCTCACTACCTCATGGTTGACAA
LOC_Os11g19210
Os.56337.1.S1_at--1076--6531Chr11:10955973..10955997 (25 bp)
GATTAGATTCGAGGCCTGAGTTTTA
LOC_Os11g19210
Os.56337.1.S1_at--92--4971Chr11:10956024..10956048 (25 bp)
GCATACGGTGCAATTCTTTCACTGT
LOC_Os11g19210
Os.56337.1.S1_at--57--7891Chr11:10956068..10956092 (25 bp)
GGTTATGATTCAGTTGCCTCGGAAA
LOC_Os11g19210
Os.56337.1.S1_at--64--5551Chr11:10956089..10956113 (25 bp)
GAAACTGAGGTTTCTAGGCTCCAGG
LOC_Os11g19210
Os.56337.1.S1_at--378--6231Chr11:10956115..10956139 (25 bp)
GATGTGTTTAGCACCTTTTCAGGTA
LOC_Os11g19210
Os.56337.1.S1_at--537--10012Chr11:10956140..10956164 (25 bp)
TAGCTCACACATTATTCCAGACCAG
LOC_Os11g19210
Os.56337.1.S1_at--750--4351Chr11:10956174..10956198 (25 bp)
CCAGACTCCCGGTATCTTTGAAATG
LOC_Os11g19210
Os.56337.1.S1_at--935--7931Chr11:10956223..10956247 (25 bp)
GGATTATTGATTTACCACCTCACAA
LOC_Os11g19210
Target Sequence 
ACATCAGGTTTGACATCAGCCCATGTGAGCACTTCAGCAGGGTAAGGAAAGACGGCAAGAAGGTGATCGACAGAGGGTCT
CACTACCTCATGGTTGACAAGGATGAGTTAGAGATTAGATTCGAGGCCTGAGTTTTAGATGGAGGGAAGGAATTACAGGT
GGTGCATACGGTGCAATTCTTTCACTGTATAATTTATTTGTTGCAGTGGTTATGATTCAGTTGCCTCGGAAACTGAGGTT
TCTAGGCTCCAGGAGATGTGTTTAGCACCTTTTCAGGTATAGCTCACACATTATTCCAGACCAGAAATGTCTCCCAGACT
CCCGGTATCTTTGAAATGGATAGTCTGGGGAACATGTAAAATGGATTATTGATTTACCACCTCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis