Browse Element(s) Details


OsAffx.31055.1.S1_at

Description tigr:9639.m01783
TID=OsAffx.31055.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1917010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19149Os.14771.1.S1_at4/1111+10903553..10903828NA
LOC_Os11g19149OsAffx.28888.1.S1_x_at1/1111+10903553..10903828NA
LOC_Os11g19160Os.52968.1.S1_at11/1111+10913022..10917118beta-D-xylosidase, putative, expressed
LOC_Os11g19160OsAffx.2931.1.S1_at1/1111+10913022..10917118beta-D-xylosidase, putative, expressed
LOC_Os11g19170OsAffx.31055.1.S1_at10/1111+10925903..10926280hypothetical protein
LOC_Os11g19180NANA11+10933699..10933920hypothetical protein
LOC_Os11g19190Os.26886.3.S1_x_at7/1111+10939788..10943136transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19190Os.26886.1.S1_x_at7/1111+10939788..10943136transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19200Os.26886.2.S1_s_at7/1111+10944825..10947940transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19200Os.26886.6.S1_s_at7/1111+10944825..10947940transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19200OsAffx.16467.1.S1_at7/1111+10944825..10947940transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19210Os.56337.1.S1_at11/1111+10950335..10956302Glycosyl hydrolase family 3 C terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31055.1.S1_at--895--7651Chr11:10926222..10926246 (25 bp)
GGGATCCCTCCCTCGGGAGCTCGGT
LOC_Os11g19170
OsAffx.31055.1.S1_at--887--7511Chr11:10926193..10926217 (25 bp)
GTGGATCTAGCGGTGCTGACCTCGG
LOC_Os11g19170
OsAffx.31055.1.S1_at--356--7311NONE
GTGCTGACCTCGGTTGGTGGCTTAA
NONE
OsAffx.31055.1.S1_at--352--8911Chr11:10925988..10926201 (25 bp)
TGACCTCGGTTGGTGGCTTAACTAA
LOC_Os11g19170
OsAffx.31055.1.S1_at--71--6631Chr11:10925980..10926004 (25 bp)
GTTGGTGGCTTAACTAAGTGCCTGC
LOC_Os11g19170
OsAffx.31055.1.S1_at--505--7731Chr11:10925977..10926001 (25 bp)
GGTGGCTTAACTAAGTGCCTGCGAA
LOC_Os11g19170
OsAffx.31055.1.S1_at--270--4891Chr11:10925973..10925997 (25 bp)
GCTTAACTAAGTGCCTGCGAAAATC
LOC_Os11g19170
OsAffx.31055.1.S1_at--855--3737Chr11:8129675..8129694 (20 bp)
CTAAGTGCCTGCGAAAATCATTTTC
NONE
OsAffx.31055.1.S1_at--527--4592Chr11:1748670..1748692 (22 bp)
GCGAAAATCATTTTCACGCGCGGGC
NONE
OsAffx.31055.1.S1_at--383--8251Chr11:10925935..10925959 (25 bp)
GGCACGCTGCCCGATTGGAAATATG
LOC_Os11g19170
OsAffx.31055.1.S1_at--479--3351Chr11:10925933..10925957 (25 bp)
CACGCTGCCCGATTGGAAATATGCT
LOC_Os11g19170
Target Sequence 
GGGATCCCTCCCTCGGGAGCTCGGTGTGGGTGGATCTAGCGGTGCTGACCTCGGTTGGTGGCTTAACTAAGTGCCTGCGA
AAATCATTTTCACGCGCGGGCACGCTGCCCGATTGGAAATATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis