Browse Element(s) Details


OsAffx.2931.1.S1_at

Description tigr:9630.m03928
TID=OsAffx.2931.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4065011/11hypothetical protein
LOC_Os11g191601/11beta-D-xylosidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40590OsAffx.12431.1.S1_at11/112+24618878..24619516hypothetical protein
LOC_Os02g40600OsAffx.12432.1.S1_at11/112+24621341..24622075hypothetical protein
LOC_Os02g40610OsAffx.2929.1.S1_at10/112+24623026..24625441hypothetical protein
LOC_Os02g40620OsAffx.24664.1.S1_at11/112+24625936..24626679hypothetical protein
LOC_Os02g40630OsAffx.2930.1.S1_at11/112+24629693..24630130hypothetical protein
LOC_Os02g40640OsAffx.24665.1.S1_at11/112+24635414..24636112hypothetical protein
LOC_Os02g40650OsAffx.2931.1.S1_at11/112+24637524..24638189hypothetical protein
LOC_Os02g40664Os.18434.1.S1_at11/112+24639637..24645322zinc finger family protein, putative, expressed
LOC_Os02g40664OsAffx.24666.1.S1_at9/112+24639637..24645322zinc finger family protein, putative, expressed
LOC_Os02g40680Os.51164.1.S1_at11/112+24661382..24664923Mis12 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2931.1.S1_at--582--8611Chr02:24637600..24637624 (25 bp)
TGGTGCTCATGTCAGCGTTGCTCTA
LOC_Os02g40650
OsAffx.2931.1.S1_at--121--10731Chr02:24637617..24637641 (25 bp)
TTGCTCTACTATCCCTACAAGTGGT
LOC_Os02g40650
OsAffx.2931.1.S1_at--322--9852Chr11:10913517..10913648 (24 bp)
TACAAGTGGTCCTTCGACGACGGCA
LOC_Os11g19160
OsAffx.2931.1.S1_at--694--2851Chr02:24637656..24637680 (25 bp)
AAGTCCGCGGAGTTCAGCGTCGCCG
LOC_Os02g40650
OsAffx.2931.1.S1_at--419--7251Chr02:24637755..24637779 (25 bp)
GTCCGCATCAAGGAGCCGCGCAGGT
LOC_Os02g40650
OsAffx.2931.1.S1_at--604--2571Chr02:24637875..24637899 (25 bp)
AACGAGAACACCACGGAGGCGAGGT
LOC_Os02g40650
OsAffx.2931.1.S1_at--827--5391Chr02:24637922..24637946 (25 bp)
GAACGCCGTCCCAGAGTTCGCGCGG
LOC_Os02g40650
OsAffx.2931.1.S1_at--216--4071Chr02:24638011..24638035 (25 bp)
CGAGGTACTGCAGGTCGTGCATGCA
LOC_Os02g40650
OsAffx.2931.1.S1_at--1118--3411Chr02:24638034..24638058 (25 bp)
CAGACGGTGATCGAGTGCAAGCATC
LOC_Os02g40650
OsAffx.2931.1.S1_at--119--4651Chr02:24638092..24638116 (25 bp)
GCGTGACGACGGATTTCCCGACCTT
LOC_Os02g40650
OsAffx.2931.1.S1_at--1152--7271Chr02:24638133..24638157 (25 bp)
GTGCCGTATCCGCTGTATCAGGTAT
LOC_Os02g40650
Target Sequence 
TGGTGCTCATGTCAGCGTTGCTCTACTATCCCTACAAGTGGTCCTTCGACGACGGCAAGTCCGCGGAGTTCAGCGTCGCC
GTCGCCGGCGTCAGCGGGCTCGACCCGGACCGCGACCTCGGGCGGCCCACGCTGGACCCCACGTTCGACCTCACCGTCCG
CATCAAGGAGCCGCGCAGGTACAGCGTGGCGTGCGTCGAGCGCGGCACGACGGCGGCCGTGTCCTACCGCGGCGTCCAGC
TGGCGAGCGGGCCCGCGCCGGAGCTCTGCGGGAGGAACGAGAACACCACGGAGGCGAGGTCCGTGATGGCGTGGGGCCAC
GCGAACGCCGTCCCAGAGTTCGCGCGGGAGCGCCTCGCCGAGGAGCTCCGCCGCGGGGACGCGGCGGTGGACGTGACCCT
GACGACGCCGGCGAGGTACTGCAGGTCGTGCATGCAGACGGTGATCGAGTGCAAGCATCGCGTGGGCAGCGGGGAGTTCT
CGCCGCGGTGCGGCGTGACGACGGATTTCCCGACCTTTCCCGACAGCCCAGACGTGCCGTATCCGCTGTATCAGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis