Browse Element(s) Details


OsAffx.12431.1.S1_at

Description tigr:9630.m03922
TID=OsAffx.12431.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4059011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40570OsAffx.22848.3.S1_x_at3/112+24593903..24599860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40570OsAffx.22848.4.S1_at2/112+24593903..24599860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40570OsAffx.22848.4.S1_x_at1/112+24593903..24599860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40580NANA2+24605906..24612410retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40590OsAffx.12431.1.S1_at11/112+24618878..24619516hypothetical protein
LOC_Os02g40600OsAffx.12432.1.S1_at11/112+24621341..24622075hypothetical protein
LOC_Os02g40610OsAffx.2929.1.S1_at10/112+24623026..24625441hypothetical protein
LOC_Os02g40620OsAffx.24664.1.S1_at11/112+24625936..24626679hypothetical protein
LOC_Os02g40630OsAffx.2930.1.S1_at11/112+24629693..24630130hypothetical protein
LOC_Os02g40640OsAffx.24665.1.S1_at11/112+24635414..24636112hypothetical protein
LOC_Os02g40650OsAffx.2931.1.S1_at11/112+24637524..24638189hypothetical protein
LOC_Os02g40664Os.18434.1.S1_at11/112+24639637..24645322zinc finger family protein, putative, expressed
LOC_Os02g40664OsAffx.24666.1.S1_at9/112+24639637..24645322zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12431.1.S1_at--886--9411Chr02:24619419..24619443 (25 bp)
TCGTGCTGTTCGCTGGCTTGATCTT
LOC_Os02g40590
OsAffx.12431.1.S1_at--319--4932Chr03:23850261..23850495 (25 bp)
GCTTGATCTTCTTCGCAATCGACGA
NONE
OsAffx.12431.1.S1_at--317--531Chr02:24619387..24619411 (25 bp)
ATCGACGACAATGACGCGCTGTACT
LOC_Os02g40590
OsAffx.12431.1.S1_at--825--6831Chr02:24619327..24619351 (25 bp)
GTTTCGGAGCTTGGCCGGGATCCCA
LOC_Os02g40590
OsAffx.12431.1.S1_at--936--5771Chr02:24619243..24619267 (25 bp)
GACGAGTGCCTCGAGCCTGGCACTG
LOC_Os02g40590
OsAffx.12431.1.S1_at--435--8251Chr02:24619225..24619249 (25 bp)
GGCACTGCCGTGGAGGTGACCTACC
LOC_Os02g40590
OsAffx.12431.1.S1_at--500--1471Chr02:24619149..24619173 (25 bp)
AGAAGGCGAAGGACCAGCACGTCGT
LOC_Os02g40590
OsAffx.12431.1.S1_at--289--7351Chr02:24619033..24619057 (25 bp)
GTGAAGATGCCGTCCAAACACAGGG
LOC_Os02g40590
OsAffx.12431.1.S1_at--914--4091Chr02:24618995..24619019 (25 bp)
CGACGGGACGCTGATATCGTGCAAG
LOC_Os02g40590
OsAffx.12431.1.S1_at--451--4251Chr02:24618934..24618958 (25 bp)
CCGTGCGACGTGTCCAGTATGGACA
LOC_Os02g40590
OsAffx.12431.1.S1_at--69--9231Chr02:24618922..24618946 (25 bp)
TCCAGTATGGACATCCCCGTGCCAT
LOC_Os02g40590
Target Sequence 
TCGTGCTGTTCGCTGGCTTGATCTTCTTCGCAATCGACGACAATGACGCGCTGTACTCCGCCGCTGTCGACGCCGTCTCC
GGCCTCGACCCCGTTTCGGAGCTTGGCCGGGATCCCACGCTGGACCCGACTTTCGACCTCACCGTCCGCATCAGGTCGCG
GAGCTGGTTGCGCGGGGACGAGTGCCTCGAGCCTGGCACTGCCGTGGAGGTGACCTACCGCGGCGTCCTGCTCGCCAGCG
GGCCCGTCGAGAAGTTCTGCTCGGGAGGGAAGAAGGCGAAGGACCAGCACGTCGTGGCGTGGGGCACCGGGGTGCGCTTG
CCGGGGTTCGCTCTGGACGCGCTGGTGGCGGACGCGCGGCGCGGGGCGGAGGCGTTCGACGTCGCGGTGAAGATGCCGTC
CAAACACAGGGGTCACGTGACGGTCGACGGGACGCTGATATCGTGCAAGGCGAGGCGGGTCGGGGACGCCGCCGCGCTGG
GGACGCCGTGCGACGTGTCCAGTATGGACATCCCCGTGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis