Browse Element(s) Details


Os.18434.1.S1_at

Description gb:AK072178.1
DB_XREF= gi:32982201
TID=Os.18434.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18434 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013145E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145E21, full insert sequence.
FL= gb:AK072178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4066411/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40590OsAffx.12431.1.S1_at11/112+24618878..24619516hypothetical protein
LOC_Os02g40600OsAffx.12432.1.S1_at11/112+24621341..24622075hypothetical protein
LOC_Os02g40610OsAffx.2929.1.S1_at10/112+24623026..24625441hypothetical protein
LOC_Os02g40620OsAffx.24664.1.S1_at11/112+24625936..24626679hypothetical protein
LOC_Os02g40630OsAffx.2930.1.S1_at11/112+24629693..24630130hypothetical protein
LOC_Os02g40640OsAffx.24665.1.S1_at11/112+24635414..24636112hypothetical protein
LOC_Os02g40650OsAffx.2931.1.S1_at11/112+24637524..24638189hypothetical protein
LOC_Os02g40664Os.18434.1.S1_at11/112+24639637..24645322zinc finger family protein, putative, expressed
LOC_Os02g40664OsAffx.24666.1.S1_at9/112+24639637..24645322zinc finger family protein, putative, expressed
LOC_Os02g40680Os.51164.1.S1_at11/112+24661382..24664923Mis12 protein, expressed
LOC_Os02g40690NANA2+24665535..24665747hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18434.1.S1_at--968--2931Chr02:24640166..24640190 (25 bp)
AAGGCAGTTTGCCATTGTCTCTTGC
LOC_Os02g40664
Os.18434.1.S1_at--1012--10691Chr02:24640158..24640182 (25 bp)
TTGCCATTGTCTCTTGCGAAGCAAG
LOC_Os02g40664
Os.18434.1.S1_at--968--5591Chr02:24640115..24640139 (25 bp)
GAAATTTCATTGGTGTCATTGCTTA
LOC_Os02g40664
Os.18434.1.S1_at--469--31Chr02:24640107..24640131 (25 bp)
ATTGGTGTCATTGCTTAGTAGGTCA
LOC_Os02g40664
Os.18434.1.S1_at--134--7991Chr02:24639839..24639863 (25 bp)
GGATGTTTCTAATTGATGAACCTCT
LOC_Os02g40664
Os.18434.1.S1_at--960--5311Chr02:24639822..24639846 (25 bp)
GAACCTCTTTTCATTTTGCCTTTTG
LOC_Os02g40664
Os.18434.1.S1_at--319--7531Chr02:24639734..24639758 (25 bp)
GTGGCAATGTAATTCCATGGATTTC
LOC_Os02g40664
Os.18434.1.S1_at--820--10551Chr02:24639712..24639736 (25 bp)
TTCTTGTTTTTATTCACCAGTTATT
LOC_Os02g40664
Os.18434.1.S1_at--282--9751Chr02:24639688..24639712 (25 bp)
TAATTGCTGGTGTTCTGCTGTCGCC
LOC_Os02g40664
Os.18434.1.S1_at--1031--9111Chr02:24639673..24639697 (25 bp)
TGCTGTCGCCTTGCCGTGAATTGCA
LOC_Os02g40664
Os.18434.1.S1_at--918--1191Chr02:24639648..24639672 (25 bp)
AGTATTATCCACTACATGCACGTCC
LOC_Os02g40664
Target Sequence 
AAGGCAGTTTGCCATTGTCTCTTGCGAAGCAAGTGCNAAAGATGATGGTGTAGAAATTTCATTGGTGTCATTGCTTAGTA
GGTCANTAGTGCAGTAGCTTAGCATTNATCCTTTGTTCTTCTGTTCAAGTCAAGGATGGCNGGTATACCGGAAATGGGGA
GGTGAGCTTGGAGGTAAATATGTTTTTGGGGGTATACTGGAGAAAGTGAATGGGGGCTTGGTGGTAAATACATTGTGAAG
GGGGCCTGGGAAGAAATAGTAGAGAACTGGAGCAGTGGTGTAATTGCTACAAGGAGTAAGATTGTGTAGGTTGGTAATTT
AGATTGTCAGGATGTTTCTAATTGATGAACCTCTTTTCATTTTGCCTTTTGGTGATGTAAAGGGTCTGGTATGGGGGAGG
TATACCATAGAATCTTGGGGAATTTTGATTTGGGGTGGCAATGTAATTCCATGGATTTCTTGTTTTTATTCACCAGTTAT
TAATTGCTGGTGTTCTGCTGTCGCCTTGCCGTGAATTGCAAGTATTATCCACTACATGCACGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis