Browse Element(s) Details


OsAffx.24665.1.S1_at

Description tigr:9630.m03927
TID=OsAffx.24665.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4064011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40580NANA2+24605906..24612410retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40590OsAffx.12431.1.S1_at11/112+24618878..24619516hypothetical protein
LOC_Os02g40600OsAffx.12432.1.S1_at11/112+24621341..24622075hypothetical protein
LOC_Os02g40610OsAffx.2929.1.S1_at10/112+24623026..24625441hypothetical protein
LOC_Os02g40620OsAffx.24664.1.S1_at11/112+24625936..24626679hypothetical protein
LOC_Os02g40630OsAffx.2930.1.S1_at11/112+24629693..24630130hypothetical protein
LOC_Os02g40640OsAffx.24665.1.S1_at11/112+24635414..24636112hypothetical protein
LOC_Os02g40650OsAffx.2931.1.S1_at11/112+24637524..24638189hypothetical protein
LOC_Os02g40664Os.18434.1.S1_at11/112+24639637..24645322zinc finger family protein, putative, expressed
LOC_Os02g40664OsAffx.24666.1.S1_at9/112+24639637..24645322zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24665.1.S1_at--667--3971Chr02:24635987..24636011 (25 bp)
CGGTGTATGCTTCGGCCTGTTTCTG
LOC_Os02g40640
OsAffx.24665.1.S1_at--944--8771Chr02:24635970..24635994 (25 bp)
TGTTTCTGGCCATCTTCGCGATCAT
LOC_Os02g40640
OsAffx.24665.1.S1_at--117--10631Chr02:24635881..24635905 (25 bp)
TTCGTCGCGATCAACGCCGTCTCGG
LOC_Os02g40640
OsAffx.24665.1.S1_at--1145--3991Chr02:24635874..24635898 (25 bp)
CGATCAACGCCGTCTCGGGCGTCGA
LOC_Os02g40640
OsAffx.24665.1.S1_at--311--3951Chr02:24635814..24635838 (25 bp)
CGGTGTTCAGCCTGACCGTCCGCGT
LOC_Os02g40640
OsAffx.24665.1.S1_at--366--5091Chr02:24635748..24635772 (25 bp)
GCACGTCGGTGCTGGTGTCCTACCG
LOC_Os02g40640
OsAffx.24665.1.S1_at--1063--9371Chr02:24635556..24635580 (25 bp)
TCGAGGTGACGCTCGCGATGCCGTA
LOC_Os02g40640
OsAffx.24665.1.S1_at--524--5751Chr02:24635549..24635573 (25 bp)
GACGCTCGCGATGCCGTACTACGGG
LOC_Os02g40640
OsAffx.24665.1.S1_at--622--4051Chr02:24635541..24635565 (25 bp)
CGATGCCGTACTACGGGCAGCGGAA
LOC_Os02g40640
OsAffx.24665.1.S1_at--900--9931Chr02:24635530..24635554 (25 bp)
TACGGGCAGCGGAAGGTGGCGTCGT
LOC_Os02g40640
OsAffx.24665.1.S1_at--1011--4011Chr02:24635511..24635535 (25 bp)
CGTCGTGCTGGGACAGGGTCGGCGA
LOC_Os02g40640
Target Sequence 
CGGTGTATGCTTCGGCCTGTTTCTGGCCATCTTCGCGATCATGCTGGTCGTCCTCTGCATCCGCCGGCCCGACACGGACG
GGATGGCGGCGAGCCCGCCCGACTACTTCGTCGCGATCAACGCCGTCTCGGGCGTCGACCCGTCCACGGACCTCGGCCGG
CCGGCGCTCGACCCGGTGTTCAGCCTGACCGTCCGCGTCGCCTCGCGGAGCTCCACCCGCGGGGCGTGCGTCAGGGCCGG
CACGTCGGTGCTGGTGTCCTACCGCGGCGTCCCGCTGGCCGGCGGGCGCGCGCCGGCGGACCCGGAGCTCTGCGCGGGGC
CGATGGGCGCGGCGGAGGACGGCTCCGTCGTCGCGCGGGGGAGCGGGGCGCGCGTGCCGGGGACACAGCTGGACGCCCTC
GCGGAGGACATGCGGCGCGGCGAGGCGCTGTTCGAGGTGACGCTCGCGATGCCGTACTACGGGCAGCGGAAGGTGGCGTC
GTGCTGGGACAGGGTCGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis