Browse Element(s) Details


OsAffx.24664.1.S1_at

Description tigr:9630.m03925
TID=OsAffx.24664.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4062011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40580NANA2+24605906..24612410retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40590OsAffx.12431.1.S1_at11/112+24618878..24619516hypothetical protein
LOC_Os02g40600OsAffx.12432.1.S1_at11/112+24621341..24622075hypothetical protein
LOC_Os02g40610OsAffx.2929.1.S1_at10/112+24623026..24625441hypothetical protein
LOC_Os02g40620OsAffx.24664.1.S1_at11/112+24625936..24626679hypothetical protein
LOC_Os02g40630OsAffx.2930.1.S1_at11/112+24629693..24630130hypothetical protein
LOC_Os02g40640OsAffx.24665.1.S1_at11/112+24635414..24636112hypothetical protein
LOC_Os02g40650OsAffx.2931.1.S1_at11/112+24637524..24638189hypothetical protein
LOC_Os02g40664Os.18434.1.S1_at11/112+24639637..24645322zinc finger family protein, putative, expressed
LOC_Os02g40664OsAffx.24666.1.S1_at9/112+24639637..24645322zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24664.1.S1_at--541--6371Chr02:24626512..24626536 (25 bp)
GATCCTCATAGCAGTAGCCTTCTTG
LOC_Os02g40620
OsAffx.24664.1.S1_at--938--711Chr02:24626481..24626505 (25 bp)
ATGATTGTTGCCATCGTCAAAGACT
LOC_Os02g40620
OsAffx.24664.1.S1_at--548--7091Chr02:24626466..24626490 (25 bp)
GTCAAAGACTGGACGCAACCGGCCT
LOC_Os02g40620
OsAffx.24664.1.S1_at--256--9351Chr02:24626345..24626369 (25 bp)
TCGCGTCGCAACGTGCCGACATGGG
LOC_Os02g40620
OsAffx.24664.1.S1_at--277--7751Chr02:24626290..24626314 (25 bp)
GGTGTACTACGGAGGAGTCCTGCTC
LOC_Os02g40620
OsAffx.24664.1.S1_at--622--7091Chr02:24626112..24626136 (25 bp)
GTCACGCTCACGGTCCAAAGGTACA
LOC_Os02g40620
OsAffx.24664.1.S1_at--712--2311Chr02:24626096..24626120 (25 bp)
AAAGGTACACCTACGCCGAGTCGTG
LOC_Os02g40620
OsAffx.24664.1.S1_at--984--7971Chr02:24626041..24626065 (25 bp)
GGATGCCGCCGCGTTGATAACTCCG
LOC_Os02g40620
OsAffx.24664.1.S1_at--217--6651Chr02:24626029..24626053 (25 bp)
GTTGATAACTCCGTGCAGCCTGTAC
LOC_Os02g40620
OsAffx.24664.1.S1_at--994--9271Chr02:24626020..24626044 (25 bp)
TCCGTGCAGCCTGTACGACGAAAAT
LOC_Os02g40620
OsAffx.24664.1.S1_at--546--7851Chr02:24625971..24625995 (25 bp)
GGTTACGGCGGGTATTCTTCGCAGC
LOC_Os02g40620
Target Sequence 
GATCCTCATAGCAGTAGCCTTCTTGGCTATGATGATTGTTGCCATCGTCAAAGACTGGACGCAACCGGCCTCCTACTCCG
TCGCGATCGATTCCGTCGCCGGCCTCGACCCGGAGACGGACCTGCCCCGCGACACGCTCAACCCGGAGTTCAACCTCACG
CTCCGCCTCGCGTCGCAACGTGCCGACATGGGGGTCTGCTTCGAGGCCGGCACCACCGTGGCGGTGTACTACGGAGGAGT
CCTGCTCGCCGGCGCCGCCGTGCCGGCGCTCTGCGCGGGGCCGCGGCCGTCGGCCGAGGAGGAGAGCGTCGTCGCGTGGG
GGAGAGGGGTGCCCGTGCCACGCCTGGCTCGGGACCGCCTCGCCGGGGACCTGCGGGGCGGCGGCGCGGCGGAGTTCGAC
GTCACGCTCACGGTCCAAAGGTACACCTACGCCGAGTCGTGGGATGTCGTGTTGTGCAGCGGTAAGGTAGGGGATGCCGC
CGCGTTGATAACTCCGTGCAGCCTGTACGACGAAAATGTGCAGGAGCCGTCGCTGGAACCGGGTTACGGCGGGTATTCTT
CGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis