Browse Element(s) Details


Os.6812.1.S1_at

Description gb:AK058583.1
DB_XREF= gi:32968601
TID=Os.6812.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0058E19.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-F11, full insert sequence.
FL= gb:AK058583.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2167011/11dehydration stress-induced protein, putative, expressed
LOC_Os10g217005/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21660Os.46572.1.S1_at11/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.1.S1_s_at10/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.1.S1_at9/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.2.S1_at1/1110+10756636..10766649expressed protein
LOC_Os10g21670Os.6812.1.S1_at11/1110+10778872..10779654dehydration stress-induced protein, putative, expressed
LOC_Os10g21679NANA10+10783566..10783886NA
LOC_Os10g21690OsAffx.30485.1.S1_at11/1110+10788510..10790284hypothetical protein
LOC_Os10g21690OsAffx.20879.1.S1_at1/1110+10788510..10790284hypothetical protein
LOC_Os10g21690Os.27004.1.A1_at1/1110+10788510..10790284hypothetical protein
LOC_Os10g21700OsAffx.20453.1.S1_at7/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21700Os.6812.1.S1_at5/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21700Os.52530.1.S1_at1/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21710OsAffx.30486.1.S1_at10/1110+10798197..10801548hypothetical protein
LOC_Os10g21710OsAffx.11259.1.S1_at1/1110+10798197..10801548hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6812.1.S1_at--644--4332Chr10:10793501..10793525 (25 bp)
CCATGATCATCGAGGTAGCTGCCTA
LOC_Os10g21700
Os.6812.1.S1_at--977--1011Chr10:10779435..10779459 (25 bp)
AGGTAGCTGCCTATAGCTCCATCGA
LOC_Os10g21670
Os.6812.1.S1_at--1123--291Chr10:10779447..10779471 (25 bp)
ATAGCTCCATCGACCAGTGTTGTCT
LOC_Os10g21670
Os.6812.1.S1_at--750--1112Chr10:10793542..10793566 (25 bp)
AGTGTTGTCTCTGCGTGCATCAGCA
LOC_Os10g21700
Os.6812.1.S1_at--1023--9052Chr10:10779477..10779501 (25 bp)
TGCATCAGCATGCTAGTAACTTAAA
LOC_Os10g21670
Os.6812.1.S1_at--845--2811Chr10:10779510..10779534 (25 bp)
AAGTTCCAGGTCTAAGCCCTGTACT
LOC_Os10g21670
Os.6812.1.S1_at--902--5111Chr10:10779544..10779568 (25 bp)
GCACAGTGTCTGCTTTGCCAATGTA
LOC_Os10g21670
Os.6812.1.S1_at--1162--4872Chr10:10779555..10779579 (25 bp)
GCTTTGCCAATGTAACGTGATCATA
LOC_Os10g21670
Os.6812.1.S1_at--118--1132Chr10:10779601..10779625 (25 bp)
AGTGAATTGCAGTTTGTGCCATCTT
LOC_Os10g21670
Os.6812.1.S1_at--549--5031Chr10:10779609..10779633 (25 bp)
GCAGTTTGTGCCATCTTTCGTTAAC
LOC_Os10g21670
Os.6812.1.S1_at--902--7211Chr10:10779616..10779640 (25 bp)
GTGCCATCTTTCGTTAACAAAGGTT
LOC_Os10g21670
Target Sequence 
CCATGATCATCGAGGTAGCTGCCTATAGCTCCATCGACCAGTGTTGTCTCTGCGTGCATCAGCATGCTAGTAACTTAAAT
TAATAATAAGTTCCAGGTCTAAGCCCTGTACTATGTGTGGGGCACAGTGTCTGCTTTGCCAATGTAACGTGATCATAATA
AGTCAATTCAATTCAGAGAGTGAATTGCAGTTTGTGCCATCTTTCGTTAACAAAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis