Browse Element(s) Details


Os.46572.1.S1_at

Description gb:AK121933.1
DB_XREF= gi:37991556
TID=Os.46572.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative disease resistance protein (OSJNBa0058E19.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106P08, full insert sequence.
FL= gb:AK063230.1 gb:AK121933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2166011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21620NANA10+10742995..10743578hypothetical protein
LOC_Os10g21630OsAffx.18335.1.S1_at10/1110+10746408..10747140expressed protein
LOC_Os10g21640NANA10+10752819..10753211hypothetical protein
LOC_Os10g21660Os.46572.1.S1_at11/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.1.S1_s_at10/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.1.S1_at9/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.2.S1_at1/1110+10756636..10766649expressed protein
LOC_Os10g21670Os.6812.1.S1_at11/1110+10778872..10779654dehydration stress-induced protein, putative, expressed
LOC_Os10g21679NANA10+10783566..10783886NA
LOC_Os10g21690OsAffx.30485.1.S1_at11/1110+10788510..10790284hypothetical protein
LOC_Os10g21690OsAffx.20879.1.S1_at1/1110+10788510..10790284hypothetical protein
LOC_Os10g21690Os.27004.1.A1_at1/1110+10788510..10790284hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006808biological_processregulation of nitrogen utilization
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46572.1.S1_at--547--10731Chr10:10757168..10757192 (25 bp)
TTGAGGTATCGGAGCCCGGCAACAT
LOC_Os10g21660
Os.46572.1.S1_at--27--651Chr10:10757069..10757093 (25 bp)
ATGCAGGGTGGGATTTCTCCGCTGA
LOC_Os10g21660
Os.46572.1.S1_at--243--431Chr10:10757030..10757054 (25 bp)
ATGTCCAAGGCCACGACCAAACGAG
LOC_Os10g21660
Os.46572.1.S1_at--694--3511Chr10:10756962..10756986 (25 bp)
CATGTCGAGCGAGGTATTGTTCCAT
LOC_Os10g21660
Os.46572.1.S1_at--609--51Chr10:10756947..10756971 (25 bp)
ATTGTTCCATGTGGTGAGGGCGCCT
LOC_Os10g21660
Os.46572.1.S1_at--483--10771Chr10:10756898..10756922 (25 bp)
TTGATGCAGAGCAGAGCTTCCCGTT
LOC_Os10g21660
Os.46572.1.S1_at--795--8711Chr10:10756867..10756891 (25 bp)
TGTCGGATTCGTCAGCTATTGCTAA
LOC_Os10g21660
Os.46572.1.S1_at--921--5991Chr10:10756832..10756856 (25 bp)
GAGACGAGCATTGCTACGACTGCAA
LOC_Os10g21660
Os.46572.1.S1_at--70--311Chr10:10756802..10756826 (25 bp)
ATAGCTGCACATACCATCTTTGCTG
LOC_Os10g21660
Os.46572.1.S1_at--713--51Chr10:10756700..10756724 (25 bp)
AGGCGTTTATACATCTTTTACCCAT
LOC_Os10g21660
Os.46572.1.S1_at--672--6251Chr10:10756664..10756688 (25 bp)
GATGGTGCCATATTCTTGGTCGAAT
LOC_Os10g21660
Target Sequence 
TTGAGGTATCGGAGCCCGGCAACATCGGCTGCGGATGCGAGGCCACCGGAGAGGCCATTGTTGGGGAGGTGGATTCTCGT
GAGGGACGAGAGGTTGGAGATGCAGGGTGGGATTTCTCCGCTGAGGCCCTGTGCCTCCATGTCCAAGGCCACGACCAAAC
GAGGCTTTGGGAGCTCGCTGGAGCATGTCACGCCGCGCCAGGTGCACATGTCGAGCGAGGTATTGTTCCATGTGGTGAGG
GCGCCTCCCTCTGGGCTTGAGAGGTGTGATTTGATGCAGAGCAGAGCTTCCCGTTGGTTATTGTCGGATTCGTCAGCTAT
TGCTAATGCTGTAAGGGAGACGAGCATTGCTACGACTGCAATGTGTATAGCTGCACATACCATCTTTGCTGGTGTGTATT
TTGGACAATATGGTTTCAGTTTTTAGATGCTTTTGATTCTTATAGTGGACTAGGACATTTATATTAATAGGCGTTTATAC
ATCTTTTACCCATGTTGATTGTTGGATGGTGCCATATTCTTGGTCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis