Browse Element(s) Details


OsAffx.8227.1.S1_s_at

Description gb:NM_196030.1
DB_XREF= gi:37533419
TID=OsAffx.8227.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0058E19.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2166010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21620NANA10+10742995..10743578hypothetical protein
LOC_Os10g21630OsAffx.18335.1.S1_at10/1110+10746408..10747140expressed protein
LOC_Os10g21640NANA10+10752819..10753211hypothetical protein
LOC_Os10g21660Os.46572.1.S1_at11/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.1.S1_s_at10/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.1.S1_at9/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.2.S1_at1/1110+10756636..10766649expressed protein
LOC_Os10g21670Os.6812.1.S1_at11/1110+10778872..10779654dehydration stress-induced protein, putative, expressed
LOC_Os10g21679NANA10+10783566..10783886NA
LOC_Os10g21690OsAffx.30485.1.S1_at11/1110+10788510..10790284hypothetical protein
LOC_Os10g21690OsAffx.20879.1.S1_at1/1110+10788510..10790284hypothetical protein
LOC_Os10g21690Os.27004.1.A1_at1/1110+10788510..10790284hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006808biological_processregulation of nitrogen utilization
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8227.1.S1_s_at--209--2691Chr10:10764903..10764927 (25 bp)
AAGCTCCTCACAGAGTCAAGTGCCA
LOC_Os10g21660
OsAffx.8227.1.S1_s_at--294--10431Chr10:10764835..10764859 (25 bp)
TTATCTTGAAGCTGGCTGCACCCAT
LOC_Os10g21660
OsAffx.8227.1.S1_s_at--235--5431NONE
GAACCGGTCCAAATTATTGCTGGAA
NONE
OsAffx.8227.1.S1_s_at--767--6191Chr10:10763217..10763241 (25 bp)
GAGGAAGATGTTTACAGTGCTGCAC
LOC_Os10g21660
OsAffx.8227.1.S1_s_at--295--1131Chr10:10763202..10763226 (25 bp)
AGTGCTGCACTAACAGCCAGTCTGA
LOC_Os10g21660
OsAffx.8227.1.S1_s_at--830--2151Chr10:10763190..10763214 (25 bp)
ACAGCCAGTCTGAGTTCTTCAAGAA
LOC_Os10g21660
OsAffx.8227.1.S1_s_at--862--1411Chr10:10763169..10763193 (25 bp)
AGAAATACGGATGATTGCCCTGATC
LOC_Os10g21660
OsAffx.8227.1.S1_s_at--1047--71Chr10:10763156..10763180 (25 bp)
ATTGCCCTGATCATGATAATCTTAC
LOC_Os10g21660
OsAffx.8227.1.S1_s_at--161--10791Chr10:10762985..10763009 (25 bp)
TTGGCTGGACGGAGCAGTGTCTTTT
LOC_Os10g21660
OsAffx.8227.1.S1_s_at--506--7151Chr10:10762967..10762991 (25 bp)
GTCTTTTGCAAGTGTGATTGTCCTG
LOC_Os10g21660
OsAffx.8227.1.S1_s_at--961--6591Chr10:10762952..10762976 (25 bp)
GATTGTCCTGGTTCACAATATGTTA
LOC_Os10g21660
Target Sequence 
AAGCTCCTCACAGAGTCAAGTGCCATAATTGAGATAGTTAAGTCTAACTACAGTGACAGAATGAGGTCTTATCTTGAAGC
TGGCTGCACCCATCACAATGAAATCATCCAGAACATGAACCGGTCCAAATTATTGCTGGAAGAGCTCCAGTTTCTGGAGG
AAGATGTTTACAGTGCTGCACTAACAGCCAGTCTGAGTTCTTCAAGAAATACGGATGATTGCCCTGATCATGATAATCTT
ACAAATGTTTGTTCTGAGGATGAACAACAGCCTGAAGATTGGCTGGACGGAGCAGTGTCTTTTGCAAGTGTGATTGTCCT
GGTTCACAATATGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8227.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis