Browse Element(s) Details


OsAffx.18337.1.S1_at

Description gb:NM_196048.1
DB_XREF= gi:37533455
TID=OsAffx.18337.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0073L01.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2187011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21830OsAffx.20387.1.S1_x_at1/1110+10889889..10891523transposon protein, putative, unclassified
LOC_Os10g21840NANA10+10891763..10894845retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g21850OsAffx.24866.1.S1_at11/1110+10895929..10902565retrotransposon protein, putative, unclassified
LOC_Os10g21860Os.46835.1.S1_at11/1110+10912927..10913647expressed protein
LOC_Os10g21870OsAffx.18337.1.S1_at11/1110+10914548..10914985hypothetical protein
LOC_Os10g21880OsAffx.8222.1.S1_at11/1110+10916559..10916831hypothetical protein
LOC_Os10g21890Os.28351.1.A1_a_at11/1110+10920851..10924205Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os10g21890OsAffx.12012.1.S1_at1/1110+10920851..10924205Glycosyltransferase QUASIMODO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18337.1.S1_at--682--4011Chr10:10914894..10914918 (25 bp)
CGTCGGTGGCTTCCCATGACGGATC
LOC_Os10g21870
OsAffx.18337.1.S1_at--606--7971Chr10:10914874..10914898 (25 bp)
GGATCCAGCGGCGACCACGACAGAT
LOC_Os10g21870
OsAffx.18337.1.S1_at--1139--4691Chr10:10914867..10914891 (25 bp)
GCGGCGACCACGACAGATCTAGCTT
LOC_Os10g21870
OsAffx.18337.1.S1_at--32--1291Chr10:10914853..10914877 (25 bp)
AGATCTAGCTTCCTGTGGCGGATCC
LOC_Os10g21870
OsAffx.18337.1.S1_at--771--5731Chr10:10914822..10914846 (25 bp)
GACTGTGGTGTCAGTGGCGTCCCAC
LOC_Os10g21870
OsAffx.18337.1.S1_at--139--4011Chr10:10914805..10914829 (25 bp)
CGTCCCACGACAGTGGTGGTAGAGA
LOC_Os10g21870
OsAffx.18337.1.S1_at--148--8451Chr10:10914699..10914723 (25 bp)
TGGCCGGCATAGAGGACAAGACTTT
LOC_Os10g21870
OsAffx.18337.1.S1_at--660--10551Chr10:10914637..10914661 (25 bp)
TTCTTGTTTGTTCGGTCTGTTCATG
LOC_Os10g21870
OsAffx.18337.1.S1_at--835--10251Chr10:10914631..10914655 (25 bp)
TTTGTTCGGTCTGTTCATGTGTTCT
LOC_Os10g21870
OsAffx.18337.1.S1_at--126--6491Chr10:10914604..10914628 (25 bp)
GATACCGGTGATGGGAGCTGCTCAA
LOC_Os10g21870
OsAffx.18337.1.S1_at--463--5891Chr10:10914590..10914614 (25 bp)
GAGCTGCTCAATGCATCGGATCGAT
LOC_Os10g21870
Target Sequence 
CGTCGGTGGCTTCCCATGACGGATCCAGCGGCGACCACGACAGATCTAGCTTCCTGTGGCGGATCCTCGGGCGACTGTGG
TGTCAGTGGCGTCCCACGACAGTGGTGGTAGAGAAAGAGGCTCACCCCTCCTCTCCTCCTTTTCATCTGGCGACGGCGGT
GATGGTGGAGAAGGCCGGTGAGGAGGGTGAGGTGATGGCCGGCATAGAGGACAAGACTTTAGTTCTTGATGTTCATGTGT
TCATGGTGTTCTTGATGTTCTTGTTTGTTCGGTCTGTTCATGTGTTCTTGGATACCGGTGATGGGAGCTGCTCAATGCAT
CGGATCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis