Browse Element(s) Details


Os.28351.1.A1_a_at

Description gb:AK061910.1
DB_XREF= gi:32971928
TID=Os.28351.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.28351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0073L01.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A03, full insert sequence.
FL= gb:AK066204.1 gb:AK061910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2189011/11Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os06g511602/11Glycosyltransferase QUASIMODO1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21850OsAffx.24866.1.S1_at11/1110+10895929..10902565retrotransposon protein, putative, unclassified
LOC_Os10g21860Os.46835.1.S1_at11/1110+10912927..10913647expressed protein
LOC_Os10g21870OsAffx.18337.1.S1_at11/1110+10914548..10914985hypothetical protein
LOC_Os10g21880OsAffx.8222.1.S1_at11/1110+10916559..10916831hypothetical protein
LOC_Os10g21890Os.28351.1.A1_a_at11/1110+10920851..10924205Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os10g21890OsAffx.12012.1.S1_at1/1110+10920851..10924205Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os10g21910Os.9680.1.S1_at11/1110+10942514..10953538acetyl-coenzyme A carboxylase ACC1A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0045489biological_processpectin biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28351.1.A1_a_at--259--9471Chr10:10923614..10923635 (22 bp)
TCTGAATGAGGATCGCAAGCTGTGG
LOC_Os10g21890
Os.28351.1.A1_a_at--404--4731Chr10:10923629..10923653 (25 bp)
GCTGTGGAAGCTGGGCACACTGCCT
LOC_Os10g21890
Os.28351.1.A1_a_at--852--1971Chr10:10923647..10923671 (25 bp)
ACTGCCTCCAGGACTGATTACTTTT
LOC_Os10g21890
Os.28351.1.A1_a_at--375--1772Chr10:10923676..10923700 (25 bp)
ACCTGACATACCCATTGAATCGCAA
LOC_Os10g21890
Os.28351.1.A1_a_at--630--8291Chr10:10923715..10923739 (25 bp)
GGCTTGGCTATGATCCAGCTGTTGA
LOC_Os10g21890
Os.28351.1.A1_a_at--1026--4731Chr10:10923732..10923756 (25 bp)
GCTGTTGACCTTGCCGAGATTGAGA
LOC_Os10g21890
Os.28351.1.A1_a_at--904--791Chr10:10923778..10923802 (25 bp)
ATGGGAACTACAAGCCCTGGCTAGA
LOC_Os10g21890
Os.28351.1.A1_a_at--763--10031Chr10:10923799..10923823 (25 bp)
TAGACCTTGCTGTCTCCAAGTACAA
LOC_Os10g21890
Os.28351.1.A1_a_at--586--7032Chr10:10923818..10923842 (25 bp)
GTACAAGCCCTACTGGTCCAAGTAT
LOC_Os10g21890
Os.28351.1.A1_a_at--492--6951Chr10:10923843..10923867 (25 bp)
GTAGATCTTGACAATTCACACATCC
LOC_Os10g21890
Os.28351.1.A1_a_at--219--2111Chr10:10923862..10923886 (25 bp)
ACATCCAGCACTGCTACATGAGTGA
LOC_Os10g21890
Target Sequence 
TCTGAATGAGGATCGCAAGCTGTGGAAGCTGGGCACACTGCCTCCAGGACTGATTACTTTTTACAACCTGACATACCCAT
TGAATCGCAATTGGCATGTGTTGGGGCTTGGCTATGATCCAGCTGTTGACCTTGCCGAGATTGAGAATGCAGCAGTAGTT
CATTACAATGGGAACTACAAGCCCTGGCTAGACCTTGCTGTCTCCAAGTACAAGCCCTACTGGTCCAAGTATGTAGATCT
TGACAATTCACACATCCAGCACTGCTACATGAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28351.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis