Browse Element(s) Details


Os.9680.1.S1_at

Description gb:AK058817.1
DB_XREF= gi:32968835
TID=Os.9680.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9680 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative acetyl-CoA carboxylase (OSJNBa0073L01.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-F07, full insert sequence.
FL= gb:AK058817.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2191011/11acetyl-coenzyme A carboxylase ACC1A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21890Os.28351.1.A1_a_at11/1110+10920851..10924205Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os10g21890OsAffx.12012.1.S1_at1/1110+10920851..10924205Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os10g21910Os.9680.1.S1_at11/1110+10942514..10953538acetyl-coenzyme A carboxylase ACC1A, putative, expressed
LOC_Os10g21920OsAffx.18338.1.S1_at11/1110+10957839..10959377pentatricopeptide, putative, expressed
LOC_Os10g21930Os.8979.1.S1_at11/1110+10969351..10972284Kelch motif family protein, expressed
LOC_Os10g21940Os.46693.1.S1_at10/1110+10973635..10985691expressed protein
LOC_Os10g21940Os.50959.1.S1_at1/1110+10973635..10985691expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006552biological_processleucine catabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009933biological_processmeristem organization
GO:0048364biological_processroot development
GO:0048367biological_processshoot development
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003989molecular_functionacetyl-CoA carboxylase activity
GO:0004485molecular_functionmethylcrotonoyl-CoA carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9680.1.S1_at--488--2791Chr10:10952874..10952898 (25 bp)
AAGAGTATCCAAGTGGCTCTCGCGT
LOC_Os10g21910
Os.9680.1.S1_at--486--7171Chr10:10952897..10952921 (25 bp)
GTCTCGCTGAAAGCCCTGATGTGAA
LOC_Os10g21910
Os.9680.1.S1_at--97--4551Chr10:10952909..10952933 (25 bp)
GCCCTGATGTGAAAGCTTTGCCAAA
LOC_Os10g21910
Os.9680.1.S1_at--667--4391Chr10:10952928..10952952 (25 bp)
GCCAAATGGTCTTTCAATTGTTCTT
LOC_Os10g21910
Os.9680.1.S1_at--941--10391Chr10:10953089..10953113 (25 bp)
TTATTGATGGTCTCAGGCAGCTTCT
LOC_Os10g21910
Os.9680.1.S1_at--248--5071Chr10:10953105..10953129 (25 bp)
GCAGCTTCTGGGTTGACCAATGTGA
LOC_Os10g21910
Os.9680.1.S1_at--1053--2471Chr10:10953153..10953177 (25 bp)
AACAGAATCATACTCAAACGCTAAC
LOC_Os10g21910
Os.9680.1.S1_at--436--271Chr10:10953280..10953304 (25 bp)
ATATGATTGGGCCTCTGCCCTACTG
LOC_Os10g21910
Os.9680.1.S1_at--436--3831Chr10:10953294..10953318 (25 bp)
CTGCCCTACTGGATGTTTGGTGTGA
LOC_Os10g21910
Os.9680.1.S1_at--176--3951Chr10:10953367..10953391 (25 bp)
CGGAATGTTGTTCCATTTGTAGTGA
LOC_Os10g21910
Os.9680.1.S1_at--947--9751Chr10:10953506..10953530 (25 bp)
TAATACATAGCAATCCTCATCTTCT
LOC_Os10g21910
Target Sequence 
AAGAGTATCCAAGTGGCTCTCGCGTCTCGCTGAAAGCCCTGATGTGAAAGCTTTGCCAAATGGTCTTTCAATTGTTCTTA
ACAAGATGAATCCTTCAAAGAGGGAGCAGGTTATTGATGGTCTCAGGCAGCTTCTGGGTTGACCAATGTGAATTTTGATA
TCCAGCATGAACCNAACAGAATCATACTCAAACGCTAACNACTGAAGTTTAATTGGGCTATCATTGATGCAATGGAAGAG
GTTTTTTGCACATAAAATGGGAGGTTTTGAGATGGCATCTCAAGAACCATATACATACAAGGATATGATTGGGCCTCTGC
CCTACTGGATGTTTGGTGTGAGTTCTTGCAAAGAGCAGAATAAAGAGCAATGCAAAGATTAGTCAGGCACGGAATGTTGT
TCCATTTGTAGTGATGTATTTAGATGTNTTTTACTAGCATTTTTTTTCTTGGCCTGCCTCATGCCAATNTCATATAGATA
CGATGGAATTCTTGATCAAGTAATTGTTTATTTATTTTCCAATCCAAATAATACATAGCAATCCTCATCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis