Browse Element(s) Details


OsAffx.18338.1.S1_at

Description tigr:9638.m01841
TID=OsAffx.18338.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2192011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21910Os.9680.1.S1_at11/1110+10942514..10953538acetyl-coenzyme A carboxylase ACC1A, putative, expressed
LOC_Os10g21920OsAffx.18338.1.S1_at11/1110+10957839..10959377pentatricopeptide, putative, expressed
LOC_Os10g21930Os.8979.1.S1_at11/1110+10969351..10972284Kelch motif family protein, expressed
LOC_Os10g21940Os.46693.1.S1_at10/1110+10973635..10985691expressed protein
LOC_Os10g21940Os.50959.1.S1_at1/1110+10973635..10985691expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18338.1.S1_at--516--2471Chr10:10958796..10958820 (25 bp)
AACACGGTCACGTATAACACGCTGA
LOC_Os10g21920
OsAffx.18338.1.S1_at--205--4751Chr10:10958816..10958840 (25 bp)
GCTGATTCATGGGTACGTGGCGCTT
LOC_Os10g21920
OsAffx.18338.1.S1_at--123--3571Chr10:10958911..10958935 (25 bp)
CATACAATGCGCTCATTCTTGGGCT
LOC_Os10g21920
OsAffx.18338.1.S1_at--1154--1351Chr10:10958963..10958987 (25 bp)
AGAGCACTTGCTTCGGGAGCTTGAC
LOC_Os10g21920
OsAffx.18338.1.S1_at--377--7591Chr10:10958989..10959013 (25 bp)
GGGCTAAGCTTGAACCGAATGCATC
LOC_Os10g21920
OsAffx.18338.1.S1_at--621--3011Chr10:10959006..10959030 (25 bp)
AATGCATCAACCTTTTCAGCGCTGA
LOC_Os10g21920
OsAffx.18338.1.S1_at--19--2871Chr10:10959095..10959119 (25 bp)
AAGTGGCTTCCATCCAAATTACACC
LOC_Os10g21920
OsAffx.18338.1.S1_at--590--6251Chr10:10959128..10959152 (25 bp)
GATGGTTATATCTTCTTTCTGCAAG
LOC_Os10g21920
OsAffx.18338.1.S1_at--132--6151Chr10:10959200..10959224 (25 bp)
GAGGTGCATTGCTCCTGACAAGGCC
LOC_Os10g21920
OsAffx.18338.1.S1_at--734--1351Chr10:10959278..10959302 (25 bp)
AGAGAACCTCCGATCACTGAATAAT
LOC_Os10g21920
OsAffx.18338.1.S1_at--697--91Chr10:10959315..10959339 (25 bp)
ATTCCTGATGTCTACTATACTGGTG
LOC_Os10g21920
Target Sequence 
AACACGGTCACGTATAACACGCTGATTCATGGGTACGTGGCGCTTGGTGATAATGCCATGGCGGGTAGGGTTCATGAGGA
GATGGTGAAGAACCGAGTGGAGCTTGATATCGTGACATACAATGCGCTCATTCTTGGGCTTTGCAATGAAGGGAAGATGA
AGAAGGTAGAGCACTTGCTTCGGGAGCTTGACAGGGCTAAGCTTGAACCGAATGCATCAACCTTTTCAGCGCTGATTGTT
GGGTGGTGCAAGATGCAGAACTCAGAGAGAGCACTACAGCTGTTGAATGTGATGAAGAAAAGTGGCTTCCATCCAAATTA
CACCACTTATAAGATGGTTATATCTTCTTTCTGCAAGAACAAGGATTTAGAAGGAGCAGTTGATGTGATGGGGGATATGT
TGGGGAGGTGCATTGCTCCTGACAAGGCCTTGTTGAATGAATTTTTTGATGGTCTCTGGAAGGCTAAAAAATTACATCTG
GCAGAGAACCTCCGATCACTGAATAATGGTTTGAAGTTCATTCCTGATGTCTACTATACTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis