Browse Element(s) Details


Os.46693.1.S1_at

Description gb:NM_196055.1
DB_XREF= gi:37533469
TID=Os.46693.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46693 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0073L01.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0073L01.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2194010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21910Os.9680.1.S1_at11/1110+10942514..10953538acetyl-coenzyme A carboxylase ACC1A, putative, expressed
LOC_Os10g21920OsAffx.18338.1.S1_at11/1110+10957839..10959377pentatricopeptide, putative, expressed
LOC_Os10g21930Os.8979.1.S1_at11/1110+10969351..10972284Kelch motif family protein, expressed
LOC_Os10g21940Os.46693.1.S1_at10/1110+10973635..10985691expressed protein
LOC_Os10g21940Os.50959.1.S1_at1/1110+10973635..10985691expressed protein
LOC_Os10g21950Os.27639.2.S1_at10/1110+10992327..11003679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21950Os.27639.1.S1_x_at4/1110+10992327..11003679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21950OsAffx.8980.1.S1_at3/1110+10992327..11003679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21950Os.53731.1.S1_at2/1110+10992327..11003679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21956OsAffx.231.1.S1_at11/1110+11004902..11007528transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21962NANA10+11008537..11009061transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46693.1.S1_at--515--8031Chr10:10975793..10975817 (25 bp)
GGAGTGTGAGCCATCTTTAGAGAAT
LOC_Os10g21940
Os.46693.1.S1_at--1132--3631Chr10:10975282..10975306 (25 bp)
CTTCCCCTGGACATCAATCTAATTG
LOC_Os10g21940
Os.46693.1.S1_at--204--9731Chr10:10975263..10975287 (25 bp)
TAATTGACCCATCACTCAGTGGTTT
LOC_Os10g21940
Os.46693.1.S1_at--764--8051Chr10:10975238..10975262 (25 bp)
GGAGAGGGCATTATCACAGCTTGAT
LOC_Os10g21940
Os.46693.1.S1_at--660--8071Chr10:10975107..10975131 (25 bp)
GGAGCATTTTTCCTTCATTTAAAGA
LOC_Os10g21940
Os.46693.1.S1_at--880--9271Chr10:10975079..10975103 (25 bp)
TCCTGGTTCTGGCAATGCCTTGGAA
LOC_Os10g21940
Os.46693.1.S1_at--963--7011Chr10:10975051..10975075 (25 bp)
GTACTTGCTTTGGAACTCGAACTAG
LOC_Os10g21940
Os.46693.1.S1_at--585--1411NONE
AGACATCCTTTTCCAGAGTTCATTC
NONE
Os.46693.1.S1_at--596--5031Chr10:10974181..10974205 (25 bp)
GCAGTATTCCAGAGCTTCAGGGACA
LOC_Os10g21940
Os.46693.1.S1_at--52--651Chr10:10974085..10974109 (25 bp)
ATGCAGGGCAGGTACTCAGAGCTCA
LOC_Os10g21940
Os.46693.1.S1_at--544--3751Chr10:10974071..10974095 (25 bp)
CTCAGAGCTCAGTGTGCAGTTTGCT
LOC_Os10g21940
Target Sequence 
GGAGTGTGAGCCATCTTTAGAGAATCATTCGACTGGTAAAACTTCCATTGAGGATATTTCAATGGAGCATAGGAAATTAG
CAGTTGACTTGAATCATTTCCATCAGGAGTTGGAGAGACTGAAAAATGAGAATCTTTCTCCTCTTCTTCCCCTGGACATC
AATCTAATTGACCCATCACTCAGTGGTTTGGAGAGGGCATTATCACAGCTTGATATGGCAAATGAACATTTAAGGAGCAT
TTTTCCTTCATTTAAAGAGCTTCCTGGTTCTGGCAATGCCTTGGAAAGAGTACTTGCTTTGGAACTCGAACTAGCAGAAG
CACTCCAAGCAAAGAAGAAAACAGACATCCTTTTCCAGAGTTCATTCCTGAAGCAACATAATGATGAAGCAGCAGTATTC
CAGAGCTTCAGGGACATCAATGAACTGATACAGGATACGATTGAGCTGAAGAGAAGGCAAGTGGCAGTAGAAAGTGAGCT
GAAAGACATGCAGGGCAGGTACTCAGAGCTCAGTGTGCAGTTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis