Browse Element(s) Details


OsAffx.231.1.S1_at

Description gb:NM_196057.1
DB_XREF= gi:37533473
TID=OsAffx.231.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative TNP2-like transposon protein (OSJNBa0073L01.18), mRNA.
PROD=putative TNP2-like transposon protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2195611/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21940Os.46693.1.S1_at10/1110+10973635..10985691expressed protein
LOC_Os10g21940Os.50959.1.S1_at1/1110+10973635..10985691expressed protein
LOC_Os10g21950Os.27639.2.S1_at10/1110+10992327..11003679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21950Os.27639.1.S1_x_at4/1110+10992327..11003679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21950OsAffx.8980.1.S1_at3/1110+10992327..11003679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21950Os.53731.1.S1_at2/1110+10992327..11003679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21956OsAffx.231.1.S1_at11/1110+11004902..11007528transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21962NANA10+11008537..11009061transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21970Os.25164.1.A1_at8/1110+11011214..11012737hypothetical protein
LOC_Os10g21980Os.46692.1.S1_at5/1110+11015033..11021418transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21990OsAffx.30491.1.S1_x_at11/1110+11024546..11025461hypothetical protein
LOC_Os10g21990OsAffx.30491.1.S1_at11/1110+11024546..11025461hypothetical protein
LOC_Os10g22000NANA10+11028081..11031617hypothetical protein
LOC_Os10g22010Os.31497.2.S1_x_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22010OsAffx.19614.1.A1_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22010Os.1709.1.S1_x_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22010Os.17546.2.S1_x_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.231.1.S1_at--594--7091Chr10:11006143..11006167 (25 bp)
GTCACAAGAGCAACATTCCCACTAA
LOC_Os10g21956
OsAffx.231.1.S1_at--532--2231Chr10:11006119..11006143 (25 bp)
AAATACCTAGGTCTTCCGTTGATGG
LOC_Os10g21956
OsAffx.231.1.S1_at--470--8871Chr10:11006100..11006124 (25 bp)
TGATGGTAGGACGACTGCACAACAC
LOC_Os10g21956
OsAffx.231.1.S1_at--379--4091Chr10:11005730..11005754 (25 bp)
CGACCTTGGTCAAATCAGTGCTCAC
LOC_Os10g21956
OsAffx.231.1.S1_at--206--9091Chr10:11005688..11005712 (25 bp)
TGCTAACCGCTCTCAAGGTGAACAA
LOC_Os10g21956
OsAffx.231.1.S1_at--808--8011Chr10:11005634..11005658 (25 bp)
GGAGTCGTTTCCTGTGGGCCGAATC
LOC_Os10g21956
OsAffx.231.1.S1_at--1108--71Chr10:11005159..11005183 (25 bp)
ATTGCCAGCTGGATAGCCTATGCAC
LOC_Os10g21956
OsAffx.231.1.S1_at--725--3491Chr10:11005133..11005157 (25 bp)
CATGGCGCCGACAGATTGGACACAA
LOC_Os10g21956
OsAffx.231.1.S1_at--1108--8611Chr10:11005090..11005114 (25 bp)
TGGTGGGAATATCTTGCCGCATGCC
LOC_Os10g21956
OsAffx.231.1.S1_at--559--5931Chr10:11005003..11005027 (25 bp)
GAGCAAAACCGACGAATCTTCCGAA
LOC_Os10g21956
OsAffx.231.1.S1_at--1010--8231Chr10:11004962..11004986 (25 bp)
GGCAGCCCTCATCACGAAGATAAAG
LOC_Os10g21956
Target Sequence 
GTCACAAGAGCAACATTCCCACTAAAATACCTAGGTCTTCCGTTGATGGTAGGACGACTGCACAACACCCACCTACAGCT
AGGGGTGAAAACGGGAGAACGACCTTGGTCAAATCAGTGCTCACCTCACAGCCGGTATACCTGCTAACCGCTCTCAAGGT
GAACAACGAATCACTAGAAGTCCTGGATAAGCAGTGGAGTCGTTTCCTGTGGGCCGAATCGGGTGACACTACCGAAGGGA
AATGCAAAGTCAACTGGGAGAAGACCTCTTCACCAACGGTGAACGGGGGGGGATACACTAAGAAAATCTGGGATGCCATT
GCCAGCTGGATAGCCTATGCACCCATGGCGCCGACAGATTGGACACAAGCAACCACGGTTCATGAATGGTGGGAATATCT
TGCCGCATGCCACGGCGTACCAAAACTTGGGACTATATCCCTAATCCTCATAATGTCCTGGGAAATCTGGAACGAGCAAA
ACCGACGAATCTTCCGAAACAAGGAGCTAAGCACGGCAGCCCTCATCACGAAGATAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis