Browse Element(s) Details


OsAffx.30491.1.S1_at

Description tigr:9638.m01849
TID=OsAffx.30491.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2199011/11hypothetical protein
LOC_Os02g297301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21950Os.27639.2.S1_at10/1110+10992327..11003679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21950Os.27639.1.S1_x_at4/1110+10992327..11003679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21950OsAffx.8980.1.S1_at3/1110+10992327..11003679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21950Os.53731.1.S1_at2/1110+10992327..11003679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21956OsAffx.231.1.S1_at11/1110+11004902..11007528transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21962NANA10+11008537..11009061transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21970Os.25164.1.A1_at8/1110+11011214..11012737hypothetical protein
LOC_Os10g21980Os.46692.1.S1_at5/1110+11015033..11021418transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21990OsAffx.30491.1.S1_x_at11/1110+11024546..11025461hypothetical protein
LOC_Os10g21990OsAffx.30491.1.S1_at11/1110+11024546..11025461hypothetical protein
LOC_Os10g22000NANA10+11028081..11031617hypothetical protein
LOC_Os10g22010Os.31497.2.S1_x_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22010OsAffx.19614.1.A1_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22010Os.1709.1.S1_x_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22010Os.17546.2.S1_x_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22020OsAffx.30492.1.S1_at11/1110+11040805..11041293RGH2A, putative
LOC_Os10g22030OsAffx.10482.1.S1_x_at1/1110+11045760..11051363retrotransposon protein, putative, unclassified, expressed
LOC_Os10g22030Os.50591.1.S1_at1/1110+11045760..11051363retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30491.1.S1_at--50--1731Chr10:11024729..11024753 (25 bp)
ACCATGGCGGACAAGTGCTGGATGA
LOC_Os10g21990
OsAffx.30491.1.S1_at--624--5811Chr10:11024828..11024852 (25 bp)
GACGCCATACTCATCGCCGGCAAGG
LOC_Os10g21990
OsAffx.30491.1.S1_at--984--531Chr10:11024840..11024864 (25 bp)
ATCGCCGGCAAGGTATCCAAGTTCC
LOC_Os10g21990
OsAffx.30491.1.S1_at--119--5111Chr10:11024847..11024871 (25 bp)
GCAAGGTATCCAAGTTCCGGGAACG
LOC_Os10g21990
OsAffx.30491.1.S1_at--203--9211Chr10:11024918..11024942 (25 bp)
TGCCACCATCCTACGAGCAGGCGGA
LOC_Os10g21990
OsAffx.30491.1.S1_at--811--1731Chr10:11024922..11024946 (25 bp)
ACCATCCTACGAGCAGGCGGAGCAG
LOC_Os10g21990
OsAffx.30491.1.S1_at--820--5311Chr10:11025014..11025038 (25 bp)
GAAGTCGCGGCGACGGATGAGGTCG
LOC_Os10g21990
OsAffx.30491.1.S1_at--46--4211Chr10:11025102..11025289 (25 bp)
CCGGTGGGACCGAGGTACTTGCTTG
LOC_Os10g21990
OsAffx.30491.1.S1_at--235--17510Chr11:9064858..9064882 (25 bp)
ACCTTCTCCAAGTCTTCTTTCATTT
NONE
OsAffx.30491.1.S1_at--269--105910Chr11:9064861..9064885 (25 bp)
TTCTCCAAGTCTTCTTTCATTTCAC
NONE
OsAffx.30491.1.S1_at--341--10573Chr10:11040460..11040484 (25 bp)
TTCTTTCATTTCACCACGTCACTTT
NONE
Target Sequence 
ACCATGGCGGACAAGTGCTGGATGAAGGAGGTGCGCGAGCTGTCCTACGACGTCGACGACTTCTTGGACGAGATCGCCCT
CGCCGCCGCCGACAACGCCGACGCCATACTCATCGCCGGCAAGGTATCCAAGTTCCGGGAACGCGCGCAGGAGGCGAGAC
AGCGGCGGCGGCGCACCAGGTACGGCCTCTGCCACCATCCTACGAGCAGGCGGAGCAGCCGCCGGAGATGCTCGTCGACG
TCCATCACCACCAGGCGGCCGCCACCGCGGTTCGGCGCCGACGTCGAAGTCGCGGCGACGGATGAGGTCGCCAGGTGGGC
GACGGACGTCGGCGGCGAGGAGTGGGGGCTGAAGGTGGCGGGCGTCGTCGGAGCCGGTGGGACCGAGGTACTTGCTTGGG
CGAAGGAAAAGAGACCGAGCGTAAAGAATTCATGGATGATCAAAGAAGTTGATTGGGGACCATATCAAGACCTTCTCCAA
GTCTTCTTTCATTTCACCACGTCACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis