Browse Element(s) Details


OsAffx.30492.1.S1_at

Description gb:NM_196063.1
DB_XREF= gi:37533485
TID=OsAffx.30492.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0089F16.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2202011/11RGH2A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21980Os.46692.1.S1_at5/1110+11015033..11021418transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21990OsAffx.30491.1.S1_x_at11/1110+11024546..11025461hypothetical protein
LOC_Os10g21990OsAffx.30491.1.S1_at11/1110+11024546..11025461hypothetical protein
LOC_Os10g22000NANA10+11028081..11031617hypothetical protein
LOC_Os10g22010Os.31497.2.S1_x_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22010OsAffx.19614.1.A1_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22010Os.1709.1.S1_x_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22010Os.17546.2.S1_x_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22020OsAffx.30492.1.S1_at11/1110+11040805..11041293RGH2A, putative
LOC_Os10g22030OsAffx.10482.1.S1_x_at1/1110+11045760..11051363retrotransposon protein, putative, unclassified, expressed
LOC_Os10g22030Os.50591.1.S1_at1/1110+11045760..11051363retrotransposon protein, putative, unclassified, expressed
LOC_Os10g22050Os.7699.1.S1_at10/1110+11059272..11059939expressed protein
LOC_Os10g22060OsAffx.8218.1.S1_at11/1110+11061335..11065242hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30492.1.S1_at--1060--2251Chr10:11040847..11040871 (25 bp)
AAATCTTTAGCTCTAGCTGCTGGCT
LOC_Os10g22020
OsAffx.30492.1.S1_at--837--4711Chr10:11040865..11040889 (25 bp)
GCTGGCTTCTTGAACGGGACATCAT
LOC_Os10g22020
OsAffx.30492.1.S1_at--1077--3831Chr10:11040893..11040917 (25 bp)
CTGCTCATTTCAGTTCAGCTACTAC
LOC_Os10g22020
OsAffx.30492.1.S1_at--645--7111Chr10:11040924..11040948 (25 bp)
GTCATGGCAAATGTGCACTCCTCCT
LOC_Os10g22020
OsAffx.30492.1.S1_at--923--1991Chr10:11040940..11040964 (25 bp)
ACTCCTCCTCGGTTGCTTCAGAGAA
LOC_Os10g22020
OsAffx.30492.1.S1_at--444--3171Chr10:11040963..11040987 (25 bp)
AATTGATCTGTCACCTCATGTCTGC
LOC_Os10g22020
OsAffx.30492.1.S1_at--1110--8491Chr10:11041023..11041047 (25 bp)
TGGCAGCCTCTGCATTCTGAAGATT
LOC_Os10g22020
OsAffx.30492.1.S1_at--354--8571Chr10:11041089..11041113 (25 bp)
TGGATTGTCTGAACTCACCGTACTG
LOC_Os10g22020
OsAffx.30492.1.S1_at--1072--6991Chr10:11041108..11041132 (25 bp)
GTACTGTCGCTCCATGTCAGTGACG
LOC_Os10g22020
OsAffx.30492.1.S1_at--546--1871Chr10:11041157..11041181 (25 bp)
ACGAGGCAGGATTCCCGGTTCTGAG
LOC_Os10g22020
OsAffx.30492.1.S1_at--298--5131Chr10:11041207..11041231 (25 bp)
GCAAACCTGGCCTTCGACGAAAGAG
LOC_Os10g22020
Target Sequence 
AAATCTTTAGCTCTAGCTGCTGGCTTCTTGAACGGGACATCATCCACTGCTCATTTCAGTTCAGCTACTACAAGAATGTC
ATGGCAAATGTGCACTCCTCCTCGGTTGCTTCAGAGAATTGATCTGTCACCTCATGTCTGCACATTCTCCACGCTTCCAA
ACTGGATCAGAGAGCTTGGCAGCCTCTGCATTCTGAAGATTGCAGTCAGGAAACTCGGTGATGGCGACATGGATGTTCTT
GGTGGATTGTCTGAACTCACCGTACTGTCGCTCCATGTCAGTGACGCCCCTGAAGAAAGGATCATCTTCCACGAGGCAGG
ATTCCCGGTTCTGAGCTACCTCAAGCTCAGATGCAGCGTAGCAAACCTGGCCTTCGACGAAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis