Browse Element(s) Details


OsAffx.8218.1.S1_at

Description tigr:9638.m01856
TID=OsAffx.8218.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2206011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22010Os.31497.2.S1_x_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22010OsAffx.19614.1.A1_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22010Os.1709.1.S1_x_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22010Os.17546.2.S1_x_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22020OsAffx.30492.1.S1_at11/1110+11040805..11041293RGH2A, putative
LOC_Os10g22030OsAffx.10482.1.S1_x_at1/1110+11045760..11051363retrotransposon protein, putative, unclassified, expressed
LOC_Os10g22030Os.50591.1.S1_at1/1110+11045760..11051363retrotransposon protein, putative, unclassified, expressed
LOC_Os10g22050Os.7699.1.S1_at10/1110+11059272..11059939expressed protein
LOC_Os10g22060OsAffx.8218.1.S1_at11/1110+11061335..11065242hypothetical protein
LOC_Os10g22070NANA10+11066947..11067693Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g22080OsAffx.8217.1.S1_x_at11/1110+11073327..11077544hypothetical protein
LOC_Os10g22080OsAffx.8217.1.S1_at11/1110+11073327..11077544hypothetical protein
LOC_Os10g22080Os.57369.1.S1_at1/1110+11073327..11077544hypothetical protein
LOC_Os10g22080Os.15513.2.S1_x_at1/1110+11073327..11077544hypothetical protein
LOC_Os10g22090OsAffx.30493.1.S1_at11/1110+11077961..11078332hypothetical protein
LOC_Os10g22100Os.15513.1.S1_at11/1110+11082931..11085694expressed protein
LOC_Os10g22100Os.15513.2.S1_x_at11/1110+11082931..11085694expressed protein
LOC_Os10g22100OsAffx.8217.1.S1_x_at6/1110+11082931..11085694expressed protein
LOC_Os10g22110OsAffx.20446.1.S1_at11/1110+11087332..11089941hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8218.1.S1_at--1087--1051Chr10:11064885..11064909 (25 bp)
AGGGAGTACCGCCTTGGGACTATAT
LOC_Os10g22060
OsAffx.8218.1.S1_at--866--10811Chr10:11064828..11064852 (25 bp)
TTGTCTGGTTTCGTGGTTCAAGGAA
LOC_Os10g22060
OsAffx.8218.1.S1_at--491--7871Chr10:11063970..11063994 (25 bp)
GGTTTAATCTGGTGCACCCTGACAC
LOC_Os10g22060
OsAffx.8218.1.S1_at--867--9031Chr10:11063958..11063982 (25 bp)
TGCACCCTGACACCGAAGATTTCTA
LOC_Os10g22060
OsAffx.8218.1.S1_at--57--3711Chr10:11063936..11063960 (25 bp)
CTATGGGCACCTGGCTCAACATGAA
LOC_Os10g22060
OsAffx.8218.1.S1_at--1001--5311Chr10:11063918..11063938 (21 bp)
GAAGGTGATGCCTATTTCTGTCAGT
LOC_Os10g22060
OsAffx.8218.1.S1_at--579--5951Chr10:11061494..11061928 (25 bp)
GAGCAAACTCGTAAGCTTGTCAAGT
LOC_Os10g22060
OsAffx.8218.1.S1_at--33--1091Chr10:11061449..11061473 (25 bp)
AGGGCACCACGCCATTAGAGCTTTA
LOC_Os10g22060
OsAffx.8218.1.S1_at--589--10031Chr10:11061434..11061458 (25 bp)
TAGAGCTTTACTTGCTTGGCTGTGC
LOC_Os10g22060
OsAffx.8218.1.S1_at--286--3531Chr10:11061394..11061418 (25 bp)
CATGCACTCCATTTCTTGCTAAGTG
LOC_Os10g22060
OsAffx.8218.1.S1_at--638--10711Chr10:11061379..11061403 (25 bp)
TTGCTAAGTGCTAACCCATTCTGGA
LOC_Os10g22060
Target Sequence 
AGGGAGTACCGCCTTGGGACTATATTTGTACCGGCTTTAAAAAATGAGGGGCATGTTTTGTCTGGTTTCGTGGTTCAAGG
AAACTTATTCAAATTCGACGTCAAGGTGGCTGCTATGGCTGTGAGATTGAAGGGTTTAATCTGGTGCACCCTGACACCGA
AGATTTCTATGGGCACCTGGCTCAACATGAAGGTGATGCCTATTTCTGTCAGTTTGGAGATTTATAACCTGAAGTCATCT
GTATTATGTTTGGCAGGGTGCGCCAGGCTGGTGAGCACGCAAGTTAACAACACAACTGCTATATTTTCAAACATATCTTT
CAGTTCTTTTAAAGAAAAACAGATGTGCAGGAAAATTGTGAGCAAACTCGTAAGCTTGTCAAGTGGCATCAGTGAGAGCA
TGACAGGGCACCACGCCATTAGAGCTTTACTTGCTTGGCTGTGCTCTGCTCACCATTGCCATGCACTCCATTTCTTGCTA
AGTGCTAACCCATTCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis