Browse Element(s) Details


Os.7699.1.S1_at

Description gb:AK120490.1
DB_XREF= gi:37990113
TID=Os.7699.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7699 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118H09, full insert sequence.
FL= gb:AK120490.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2205010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22010Os.31497.2.S1_x_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22010OsAffx.19614.1.A1_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22010Os.1709.1.S1_x_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22010Os.17546.2.S1_x_at1/1110+11032337..11038736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22020OsAffx.30492.1.S1_at11/1110+11040805..11041293RGH2A, putative
LOC_Os10g22030OsAffx.10482.1.S1_x_at1/1110+11045760..11051363retrotransposon protein, putative, unclassified, expressed
LOC_Os10g22030Os.50591.1.S1_at1/1110+11045760..11051363retrotransposon protein, putative, unclassified, expressed
LOC_Os10g22050Os.7699.1.S1_at10/1110+11059272..11059939expressed protein
LOC_Os10g22060OsAffx.8218.1.S1_at11/1110+11061335..11065242hypothetical protein
LOC_Os10g22070NANA10+11066947..11067693Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g22080OsAffx.8217.1.S1_x_at11/1110+11073327..11077544hypothetical protein
LOC_Os10g22080OsAffx.8217.1.S1_at11/1110+11073327..11077544hypothetical protein
LOC_Os10g22080Os.57369.1.S1_at1/1110+11073327..11077544hypothetical protein
LOC_Os10g22080Os.15513.2.S1_x_at1/1110+11073327..11077544hypothetical protein
LOC_Os10g22090OsAffx.30493.1.S1_at11/1110+11077961..11078332hypothetical protein
LOC_Os10g22100Os.15513.1.S1_at11/1110+11082931..11085694expressed protein
LOC_Os10g22100Os.15513.2.S1_x_at11/1110+11082931..11085694expressed protein
LOC_Os10g22100OsAffx.8217.1.S1_x_at6/1110+11082931..11085694expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7699.1.S1_at--262--2631Chr10:11059551..11059575 (25 bp)
AAGCCGTGCAGGAGTCTAACTTTAG
LOC_Os10g22050
Os.7699.1.S1_at--1160--3711Chr10:11059566..11059590 (25 bp)
CTAACTTTAGTTTGTGCTTGCGTGT
LOC_Os10g22050
Os.7699.1.S1_at--667--3631Chr10:11059582..11059606 (25 bp)
CTTGCGTGTGAGGTTTCTTTTTCTA
LOC_Os10g22050
Os.7699.1.S1_at--350--2711Chr10:11059616..11059640 (25 bp)
AAGCATTTCCTTCAGTCTTGTTAAG
LOC_Os10g22050
Os.7699.1.S1_at--28--3671Chr10:11059666..11059690 (25 bp)
CTTACTGTCTTGTCCTTGGGTGTAA
LOC_Os10g22050
Os.7699.1.S1_at--321--5991Chr10:11059738..11059762 (25 bp)
GAGACATCTTTACCAGTTTCTGTAC
LOC_Os10g22050
Os.7699.1.S1_at--412--7011Chr10:11059759..11059783 (25 bp)
GTACTTTTCTACCTGAGTGCAACCT
LOC_Os10g22050
Os.7699.1.S1_at--817--2231Chr10:11059848..11059872 (25 bp)
ACAATAGGCCTGACCATGTATCTGG
LOC_Os10g22050
Os.7699.1.S1_at--148--3531Chr10:11059881..11059905 (25 bp)
CATCCGTCTCTAAAGTCTTGTGGGT
LOC_Os10g22050
Os.7699.1.S1_at--805--7891Chr10:11059903..11059927 (25 bp)
GGTTGAGGATCACCGTATGCCCAGC
LOC_Os10g22050
Os.7699.1.S1_at--865--10831Chr10:11060039..11060063 (25 bp)
TTGGGCCTTCCTTGAGTTCTCAAAA
NONE
Target Sequence 
AAGCCGTGCAGGAGTCTAACTTTAGTTTGTGCTTGCGTGTGAGGTTTCTTTTTCTAAAAAAAAAAAAGCATTTCCTTCAG
TCTTGTTAAGGAAATAAAGATGGTTTTTGTTTGACCTTACTGTCTTGTCCTTGGGTGTAATTGTCATTGGAAGGAACAGA
GAAATGGAGAAAAGACTGTTGGGAATTGAGACATCTTTACCAGTTTCTGTACTTTTCTACCTGAGTGCAACCTTTATTAA
GATTGATTGGTAGCAAGGATAAAAATGAAGGCCAGCAACTCGAAAGGCGGATGATGCACAATAGGCCTGACCATGTATCT
GGAACACCCCCATCCGTCTCTAAAGTCTTGTGGGTTGAGGATCACCGTATGCCCAGCCAAGCTCACTGACATGGGAAGAA
CGATGGTCGACAATACTTTTCCATATATTCCTTCTGAAAACGGCTGAGGTGGCGCACATGAATGTATTATTTNTGAAAGG
TGGCGCACTTGGGCCTTCCTTGAGTTCTCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis