Browse Element(s) Details


Os.8979.1.S1_at

Description gb:AK111523.1
DB_XREF= gi:37988186
TID=Os.8979.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative kelch-containing protein (OSJNBa0073L01.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002P06, full insert sequence.
FL= gb:AK111523.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2193011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21910Os.9680.1.S1_at11/1110+10942514..10953538acetyl-coenzyme A carboxylase ACC1A, putative, expressed
LOC_Os10g21920OsAffx.18338.1.S1_at11/1110+10957839..10959377pentatricopeptide, putative, expressed
LOC_Os10g21930Os.8979.1.S1_at11/1110+10969351..10972284Kelch motif family protein, expressed
LOC_Os10g21940Os.46693.1.S1_at10/1110+10973635..10985691expressed protein
LOC_Os10g21940Os.50959.1.S1_at1/1110+10973635..10985691expressed protein
LOC_Os10g21950Os.27639.2.S1_at10/1110+10992327..11003679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21950Os.27639.1.S1_x_at4/1110+10992327..11003679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21950OsAffx.8980.1.S1_at3/1110+10992327..11003679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21950Os.53731.1.S1_at2/1110+10992327..11003679retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8979.1.S1_at--527--7191Chr10:10971704..10971728 (25 bp)
GTCGGAATGTCCATACTTACTTGCA
LOC_Os10g21930
Os.8979.1.S1_at--777--2371Chr10:10971790..10971814 (25 bp)
AAACCGATGTTCTGAAGCCTGTGGA
LOC_Os10g21930
Os.8979.1.S1_at--747--7091Chr10:10971818..10971842 (25 bp)
GTCAGCCCCTGGAAATGGTCCAACA
LOC_Os10g21930
Os.8979.1.S1_at--487--211Chr10:10971880..10971904 (25 bp)
ATTTGTGGAAAGTCATCGTGTCGAA
LOC_Os10g21930
Os.8979.1.S1_at--827--4091Chr10:10971901..10971925 (25 bp)
CGAAAAATCTTGCAGCCGCTGAATT
LOC_Os10g21930
Os.8979.1.S1_at--904--5211Chr10:10971921..10971945 (25 bp)
GAATTAGTCAGTTGTCAGGTGCTCA
LOC_Os10g21930
Os.8979.1.S1_at--235--7331Chr10:10971985..10972009 (25 bp)
GTGCTTCTACCAACATCTGATCAAG
LOC_Os10g21930
Os.8979.1.S1_at--364--7091Chr10:10972009..10972033 (25 bp)
GTCAACGGTAGAGGCTATCACCTTA
LOC_Os10g21930
Os.8979.1.S1_at--1002--3051Chr10:10972123..10972147 (25 bp)
AATCTGTGTGTAATTCAACTCTGTA
LOC_Os10g21930
Os.8979.1.S1_at--17--4731Chr10:10972176..10972200 (25 bp)
GCTGGTTTCTTCAGTTCTCAAGACA
LOC_Os10g21930
Os.8979.1.S1_at--303--10151Chr10:10972208..10972232 (25 bp)
TATCTCCATCAGCACTGCCAAATAT
LOC_Os10g21930
Target Sequence 
GTCGGAATGTCCATACTTACTTGCAGGATTTCTTGGCAAGCTCAATTTGATCATCAAAGATGTAGATAGNCAAGATCAAT
ATAATGCAAACCGATGTTCTGAAGCCTGTGGAGTTNGTCAGCCCCTGGAAATGGTCCAACATGCCAAAATCAACAACTTT
CTTCAGAACAGGAAACTAATTTGTGGAAAGTCATCGTGTCGAAAAATCTTGCAGCCGCTGAATTAGTCAGTTGTCAGGTG
CTCAACATATAACTTGTTATGTGTTTACTTTTGTTGAGTAGATGTGCTTCTACCAACATCTGATCAAGTCAACGGTAGAG
GCTATCACCTTAAGTGAAAATGATCATTATCTGTGTATGGTTTGGATNNGTGAGTAATGAGCTGCAGAAATCAATTCAAA
CGGCAATGTACATATTTATATGTAATCTGTGTGTAATTCAACTCTGTAATACATCACATAAGATAGAGAAAACCATGCTG
GTTTCTTCAGTTCTCAAGACAACAGTGNTATCTCCATCAGCACTGCCAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis