Browse Element(s) Details


Os.52805.1.S1_at

Description gb:AK069386.1
DB_XREF= gi:32979410
TID=Os.52805.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012H16, full insert sequence.
FL= gb:AK069386.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g297505/11membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29710OsAffx.31932.2.S1_at11/1112+17729944..17734518NB-ARC domain containing protein
LOC_Os12g29719OsAffx.19888.1.S1_at11/1112+17739371..17741180hypothetical protein
LOC_Os12g29730OsAffx.30032.4.S1_at11/1112+17747403..17747939hypothetical protein
LOC_Os12g29730OsAffx.28563.1.S1_x_at1/1112+17747403..17747939hypothetical protein
LOC_Os12g29730OsAffx.16416.1.S1_x_at1/1112+17747403..17747939hypothetical protein
LOC_Os12g29740Os.50295.1.S1_at11/1112+17750698..17754132expressed protein
LOC_Os12g29750Os.52805.1.S1_at5/1112+17757459..17759947membrane protein, putative, expressed
LOC_Os12g29760Os.10021.1.S1_at11/1112+17760106..17762545oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os12g29780OsAffx.31934.1.S1_at9/1112+17773550..17774802hypothetical protein
LOC_Os12g29780OsAffx.20927.1.S1_x_at2/1112+17773550..17774802hypothetical protein
LOC_Os12g29790NANA12+17776955..17777251retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g29800OsAffx.22446.1.S1_x_at4/1112+17781976..17783633transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29800Os.12733.3.S1_x_at2/1112+17781976..17783633transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010222biological_processstem vascular tissue pattern formation
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52805.1.S1_at--790--8831Chr12:17759480..17759504 (25 bp)
TGATCATACGTCACCCGAGGATAGG
LOC_Os12g29750
Os.52805.1.S1_at--996--4611Chr12:17759504..17759528 (25 bp)
GCGAGTACGCGCTGGGATTCATCAC
LOC_Os12g29750
Os.52805.1.S1_at--129--5911Chr12:17759599..17759623 (25 bp)
GAGCTCGCCTGCGTGTACGTGCCGA
LOC_Os12g29750
Os.52805.1.S1_at--890--8731Chr12:17759612..17759636 (25 bp)
TGTACGTGCCGACGAACAACCTCTA
LOC_Os12g29750
Os.52805.1.S1_at--221--771Chr12:17759867..17759891 (25 bp)
ATGTCGGTGCCGCAGATCATCTCGG
LOC_Os12g29750
Os.52805.1.S1_at--1119--8231Chr12:17759928..17759952 (25 bp)
GGCCGGTGAAGTCTCCTTAGGCTAT
NONE
Os.52805.1.S1_at--79--2831Chr12:17759973..17759997 (25 bp)
AAGTTGTCAACTTCACACTCGGTAT
NONE
Os.52805.1.S1_at--265--11Chr12:17760038..17760062 (25 bp)
AGGAGGTTTCCAGCATTGGTAGGAT
NONE
Os.52805.1.S1_at--474--2251Chr12:17760080..17760104 (25 bp)
AAATTTGATCCACTGTGAGACAGCA
NONE
Os.52805.1.S1_at--334--7411Chr12:17760126..17760150 (25 bp)
GTGATATTTCCTTTTGCATCGGCAA
NONE
Os.52805.1.S1_at--150--5391Chr12:17760192..17760216 (25 bp)
GAAGCAATATACAAGCCTCATTACA
NONE
Target Sequence 
TGATCATACGTCACCCGAGGATAGGCGAGTACGCGCTGGGATTCATCACGTCGACGCTGACGCTGCGCGGCGTCGCCGAC
GGCCGCCGCGGCGGAGGCAGTGGCGCCGGCGGCGGCCGGGAGCTCGCCTGCGTGTACGTGCCGACGAACAACCTCTACCT
CGGCGACATCTTCCTCATGAGCCGCGCCGACGTCATCGTCCCCGACCTCTCCGTCCGCGAGGCCATCGAGATCGTCCTCT
CCGGCGGGATGTCGGTGCCGCAGATCATCTCGGCGGTGGAGGGGGTCGTCGGGCTCGGCGGCCATGGCCGGCCGGTGAAG
TCTCCTTAGGCTATGGAGTATGGAGAATGGTGTCAAGTTGTCAACTTCACACTCGGTATAATTTTGAGCTTCTGTATGAT
TAGATGATTAGTTATAGAGAGGAGGTTTCCAGCATTGGTAGGATGGAATTATGCAAGCATAAAATTTGATCCACTGTGAG
ACAGCATTAAGCTTGTATACAGAATTTGTGATATTTCCTTTTGCATCGGCAAATTATTGGTTTGCAATTTGTTTTTTGGT
ACAGTTTGTAGTTGAAGCAATATACAAGCCTCATTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis