Browse Element(s) Details


Os.10021.1.S1_at

Description gb:AK067039.1
DB_XREF= gi:32977057
TID=Os.10021.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091L23, full insert sequence.
FL= gb:AK102223.1 gb:AK067039.1 gb:AK060431.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2976011/11oxidoreductase, aldo/keto reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29719OsAffx.19888.1.S1_at11/1112+17739371..17741180hypothetical protein
LOC_Os12g29730OsAffx.30032.4.S1_at11/1112+17747403..17747939hypothetical protein
LOC_Os12g29730OsAffx.28563.1.S1_x_at1/1112+17747403..17747939hypothetical protein
LOC_Os12g29730OsAffx.16416.1.S1_x_at1/1112+17747403..17747939hypothetical protein
LOC_Os12g29740Os.50295.1.S1_at11/1112+17750698..17754132expressed protein
LOC_Os12g29750Os.52805.1.S1_at5/1112+17757459..17759947membrane protein, putative, expressed
LOC_Os12g29760Os.10021.1.S1_at11/1112+17760106..17762545oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os12g29780OsAffx.31934.1.S1_at9/1112+17773550..17774802hypothetical protein
LOC_Os12g29780OsAffx.20927.1.S1_x_at2/1112+17773550..17774802hypothetical protein
LOC_Os12g29790NANA12+17776955..17777251retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g29800OsAffx.22446.1.S1_x_at4/1112+17781976..17783633transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29800Os.12733.3.S1_x_at2/1112+17781976..17783633transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0004033molecular_functionaldo-keto reductase activity
GO:0005267molecular_functionpotassium channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10021.1.S1_at--986--2011Chr12:17761207..17761595 (25 bp)
ACTAAAGTTGGCATGCAGGGCAGCA
LOC_Os12g29760
Os.10021.1.S1_at--442--2991Chr12:17761116..17761140 (25 bp)
AATGAGATTTCCACGGTTCTTGTTG
LOC_Os12g29760
Os.10021.1.S1_at--354--5271Chr12:17761093..17761115 (23 bp)
GAATGAACTCTCCAGAACAGGTAGA
LOC_Os12g29760
Os.10021.1.S1_at--469--1331Chr12:17760531..17760555 (25 bp)
AGAGGAGAATGTGGCTGCTGCAATT
LOC_Os12g29760
Os.10021.1.S1_at--215--5211Chr12:17760506..17760530 (25 bp)
GAATTGTCTACTTCCGGTATTGATA
LOC_Os12g29760
Os.10021.1.S1_at--614--5831Chr12:17760432..17760456 (25 bp)
GACCTGGTCCAGTGGCATTGAGCAA
LOC_Os12g29760
Os.10021.1.S1_at--1160--2651Chr12:17760409..17760433 (25 bp)
AAGCCTGATATCTGGCAGCAGCCTG
LOC_Os12g29760
Os.10021.1.S1_at--331--10631Chr12:17760295..17760319 (25 bp)
TTCGTTGGTATGTTGTCTGTATCAA
LOC_Os12g29760
Os.10021.1.S1_at--410--8211Chr12:17760219..17760243 (25 bp)
GGAATAAGTTGTGCCCATGCACCTT
LOC_Os12g29760
Os.10021.1.S1_at--876--9031Chr12:17760202..17760226 (25 bp)
TGCACCTTGCTGTAATGAGGCTTGT
LOC_Os12g29760
Os.10021.1.S1_at--382--6211Chr12:17760186..17760210 (25 bp)
GAGGCTTGTATATTGCTTCAACTAC
LOC_Os12g29760
Target Sequence 
ACTAAAGTTGGCATGCAGGGCAGCAGCAGATCACTGTAAGAAGAANGGGAAAAACATTACAAAGCTAGCTATGCAGTACA
GCTTGATGAACAATGAGATTTCCACGGTTCTTGTTGGAATGAACTCTCCAGAACAGGTAGAGGAGAATGTGGCTGCTGCA
ATTGAATTGTCTACTTCCGGTATTGATAAAGAACTTCTGCACGAAGTTGAAGCAATTCTTGAGCCTGTCAAGAACATGAC
CTGGTCCAGTGGCATTGAGCAAGCCTGATATCTGGCAGCAGCCTGGCTCATTANAATTCATTCNATGTATTCATTGAGTC
AATTGTTTGCATTGCAATATTTCAATGGTGAGCAAAGGAAAGTCATCATCGGAANTTCGTTGGTATGTTGTCTGTATCAA
TTTAGAAGTCTGTGAATAGACAAACAGCCAAACATGGATGCTGATAATAATGGAATAAGTTGTGCCCATGCACCTTGCTG
TAATGAGGCTTGTATATTGCTTCAACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis