Browse Element(s) Details


OsAffx.31934.1.S1_at

Description tigr:9640.m02873
TID=OsAffx.31934.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g297809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29740Os.50295.1.S1_at11/1112+17750698..17754132expressed protein
LOC_Os12g29750Os.52805.1.S1_at5/1112+17757459..17759947membrane protein, putative, expressed
LOC_Os12g29760Os.10021.1.S1_at11/1112+17760106..17762545oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os12g29780OsAffx.31934.1.S1_at9/1112+17773550..17774802hypothetical protein
LOC_Os12g29780OsAffx.20927.1.S1_x_at2/1112+17773550..17774802hypothetical protein
LOC_Os12g29790NANA12+17776955..17777251retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g29800OsAffx.22446.1.S1_x_at4/1112+17781976..17783633transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29800Os.12733.3.S1_x_at2/1112+17781976..17783633transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29810OsAffx.11342.1.S1_at4/1112+17788859..17791561transposon protein, putative, Mutator sub-class
LOC_Os12g29820OsAffx.31935.1.S1_at11/1112+17793129..17795379hypothetical protein
LOC_Os12g29830OsAffx.31936.1.S1_at9/1112+17796489..17799486hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31934.1.S1_at--962--3211NONE
CAAGTGGTCGAGGAAGATCAGACAT
NONE
OsAffx.31934.1.S1_at--199--7491NONE
GTGGTCGAGGAAGATCAGACATCAG
NONE
OsAffx.31934.1.S1_at--147--7211Chr12:17774634..17774654 (21 bp)
GTCGAGGAAGATCAGACATCAGAAC
LOC_Os12g29780
OsAffx.31934.1.S1_at--867--10311Chr12:17774667..17774691 (25 bp)
TTTCAAGACTTTGTCGCGGACTCTC
LOC_Os12g29780
OsAffx.31934.1.S1_at--1100--10491Chr12:17774668..17774692 (25 bp)
TTCAAGACTTTGTCGCGGACTCTCC
LOC_Os12g29780
OsAffx.31934.1.S1_at--998--9691Chr12:17774669..17774693 (25 bp)
TCAAGACTTTGTCGCGGACTCTCCG
LOC_Os12g29780
OsAffx.31934.1.S1_at--611--5691Chr12:17774673..17774697 (25 bp)
GACTTTGTCGCGGACTCTCCGCCTA
LOC_Os12g29780
OsAffx.31934.1.S1_at--519--4451Chr12:17774693..17774717 (25 bp)
GCCTACTCGATTACTTTGATTTCAG
LOC_Os12g29780
OsAffx.31934.1.S1_at--294--3731Chr12:17774695..17774719 (25 bp)
CTACTCGATTACTTTGATTTCAGGA
LOC_Os12g29780
OsAffx.31934.1.S1_at--493--9911Chr12:17774696..17774720 (25 bp)
TACTCGATTACTTTGATTTCAGGAA
LOC_Os12g29780
OsAffx.31934.1.S1_at--546--3791Chr12:17774698..17774722 (25 bp)
CTCGATTACTTTGATTTCAGGAAGA
LOC_Os12g29780
Target Sequence 
CAAGTGGTCGAGGAAGATCAGACATCAGAACAATCAAGTCAGATTTCAAGACTTTGTCGCGGACTCTCCGCCTACTCGAT
TACTTTGATTTCAGGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis