Browse Element(s) Details


OsAffx.11342.1.S1_at

Description tigr:9629.m03388
TID=OsAffx.11342.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3596011/11hypothetical protein
LOC_Os12g298104/11transposon protein, putative, Mutator sub-class
LOC_Os03g202001/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35910NANA1+20201667..20201900hypothetical protein
LOC_Os01g35920NANA1+20202956..20206158hypothetical protein
LOC_Os01g35930Os.38208.1.S1_at11/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.1.S1_x_at10/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.2.S1_at10/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.1.S1_at9/111+20211101..20213199hypothetical protein
LOC_Os01g35950OsAffx.23526.1.S1_at9/111+20220487..20221594hypothetical protein
LOC_Os01g35960OsAffx.11342.1.S1_at11/111+20223152..20226101hypothetical protein
LOC_Os01g35970Os.52242.1.S1_at3/111+20230034..20233244transposon protein, putative, Mariner sub-class
LOC_Os01g35970OsAffx.2708.1.S1_x_at1/111+20230034..20233244transposon protein, putative, Mariner sub-class
LOC_Os01g35980Os.40988.1.S1_at11/111+20233891..20236248hypothetical protein
LOC_Os01g35990Os.34335.1.S1_x_at6/111+20238088..20241107expressed protein
LOC_Os01g35990Os.34335.1.S1_at4/111+20238088..20241107expressed protein
LOC_Os01g36000NANA1+20249484..20252212retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11342.1.S1_at--114--7133Chr12:17791173..17791197 (25 bp)
GTCATGCTATTGCTTGCATCCACTA
LOC_Os12g29810
OsAffx.11342.1.S1_at--132--6332Chr12:17791214..17791238 (25 bp)
GATGAATATATTGCCTCCTGCTACT
LOC_Os12g29810
OsAffx.11342.1.S1_at--651--8971Chr01:20223660..20223684 (25 bp)
TGAACATTGCCTTGAGCCTGTGGAA
LOC_Os01g35960
OsAffx.11342.1.S1_at--443--8292Chr12:17791289..17791313 (25 bp)
GGCATTCATAGCTGGCCAGTATCTA
LOC_Os12g29810
OsAffx.11342.1.S1_at--740--6892Chr12:17791307..17791331 (25 bp)
GTATCTAAGAGACCCAAGCCTGCTG
LOC_Os12g29810
OsAffx.11342.1.S1_at--562--3091Chr01:20223434..20223458 (25 bp)
AATACAGGCACTACTCAGGCTTCGT
LOC_Os01g35960
OsAffx.11342.1.S1_at--195--7091Chr01:20223411..20223435 (25 bp)
GTCAAGTGCACAATCTAGGCCTATT
LOC_Os01g35960
OsAffx.11342.1.S1_at--580--5511Chr01:20223360..20223384 (25 bp)
GAAAAGGGCATTTACCACAGACCAC
LOC_Os01g35960
OsAffx.11342.1.S1_at--213--3231Chr01:20223329..20223353 (25 bp)
CAAGTTCAAGCTGCTGTTGCACATA
LOC_Os01g35960
OsAffx.11342.1.S1_at--126--6571Chr01:20223227..20223247 (21 bp)
GATTCATTCTCCTAAGTTTGGCCAT
LOC_Os01g35960
OsAffx.11342.1.S1_at--703--5054Chr12:17791736..17791760 (25 bp)
GCAGCAACTCAAGGACCACCAAGGA
NONE
Target Sequence 
GTCATGCTATTGCTTGCATCCACTACAAAACCAATAGCCTTGATGAATATATTGCCTCCTGCTACTCAGTGAAAGCATTC
ATGTCAACATATGAACATTGCCTTGAGCCTGTGGAAGGCATTCATAGCTGGCCAGTATCTAAGAGACCCAAGCCTGCTGC
ACCTTCCTATGTTAAAATGCCAGGTAGACCAAAGAAGGAGAGGAGAAGGGAGCCACATGAAAAACCCAAAGCAACCAGGG
TGTCAAAAGTGGGCACTATCATTATGTGTAGAAGATGCAAGGGAATTGGACACAACAAGACAACTTGTGCAAAGAGAAAT
ACAGGCACTACTCAGGCTTCGTCAAGTGCACAATCTAGGCCTATTGACAAGAAGAGCTCCTCAAAAGTGAAGAAAAGGGC
ATTTACCACAGACCACTTAGTTCAAGTTCAAGCTGCTGTTGCACATAAGATTCATTCTCCTAAGTTTGGCCATGCTATTA
CAGTAGCAGCAGCAACTCAAGGACCACCAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis