Browse Element(s) Details


OsAffx.2708.1.S1_x_at

Description tigr:9630.m02055
TID=OsAffx.2708.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2144011/11hypothetical protein
LOC_Os06g236701/11transposon protein, putative, Mariner sub-class, expressed
LOC_Os03g504001/11hypothetical protein
LOC_Os01g359701/11transposon protein, putative, Mariner sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21400Os.46012.3.S1_x_at7/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.46012.2.S1_x_at6/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.27088.1.A1_x_at6/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.46012.3.S1_at4/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400OsAffx.30217.1.S1_x_at2/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.45902.1.A1_x_at1/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21410OsAffx.12147.1.S1_at11/112+12712137..12714191hypothetical protein
LOC_Os02g21420NANA2+12717115..12717819hypothetical protein
LOC_Os02g21430Os.19622.1.S1_at10/112+12720934..12728929RNA recognition motif 2 family protein, expressed
LOC_Os02g21440OsAffx.2708.1.S1_x_at11/112+12729564..12729896hypothetical protein
LOC_Os02g21440OsAffx.2708.1.S1_at10/112+12729564..12729896hypothetical protein
LOC_Os02g21450OsAffx.12148.1.S1_at11/112+12730855..12731109hypothetical protein
LOC_Os02g21460Os.27095.1.A1_at8/112+12731905..12735277glutathione S-transferase, putative, expressed
LOC_Os02g21470Os.51469.1.S1_at10/112+12735761..12736170expressed protein
LOC_Os02g21480OsAffx.24368.1.S1_at11/112+12737804..12738814hypothetical protein
LOC_Os02g21490Os.48039.1.A1_at11/112+12741611..12746532Pre-mRNA splicing factor PRP17, putative, expressed
LOC_Os02g21500OsAffx.22314.1.S1_x_at1/112+12751822..12754543hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2708.1.S1_x_at--494--7751Chr02:12729836..12729860 (25 bp)
GGTGAACATGCTATACCTAACCTCA
LOC_Os02g21440
OsAffx.2708.1.S1_x_at--447--1051Chr02:12729756..12729780 (25 bp)
AGGTGATCTACAGGAAGGTGCCAAC
LOC_Os02g21440
OsAffx.2708.1.S1_x_at--784--7751Chr02:12729755..12729779 (25 bp)
GGTGATCTACAGGAAGGTGCCAACC
LOC_Os02g21440
OsAffx.2708.1.S1_x_at--993--7391Chr02:12729754..12729778 (25 bp)
GTGATCTACAGGAAGGTGCCAACCA
LOC_Os02g21440
OsAffx.2708.1.S1_x_at--535--8831Chr02:12729753..12729777 (25 bp)
TGATCTACAGGAAGGTGCCAACCAT
LOC_Os02g21440
OsAffx.2708.1.S1_x_at--1035--6411Chr02:12729752..12729776 (25 bp)
GATCTACAGGAAGGTGCCAACCATG
LOC_Os02g21440
OsAffx.2708.1.S1_x_at--410--451Chr02:12729751..12729775 (25 bp)
ATCTACAGGAAGGTGCCAACCATGA
LOC_Os02g21440
OsAffx.2708.1.S1_x_at--580--9491Chr02:12729750..12729774 (25 bp)
TCTACAGGAAGGTGCCAACCATGAG
LOC_Os02g21440
OsAffx.2708.1.S1_x_at--1103--3691Chr02:12729749..12729773 (25 bp)
CTACAGGAAGGTGCCAACCATGAGC
LOC_Os02g21440
OsAffx.2708.1.S1_x_at--1062--2092Chr01:20229788..20230183 (25 bp)
ACAGGAAGGTGCCAACCATGAGCTT
NONE
OsAffx.2708.1.S1_x_at--760--694Chr06:13812360..13812384 (25 bp)
ATGAGCTTCCTGGAGGTGATTTCCA
LOC_Os06g23670
Target Sequence 
GGTGAACATGCTATACCTAACCTCAATGAAGCAGTGGCTGAAGAAGCAGCAGTGGCTGATCAGGAGGATGATCAGGTTGG
AGGTGATCTACAGGAAGGTGCCAACCATGAGCTTCCTGGAGGTGATTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2708.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis