Browse Element(s) Details


OsAffx.12148.1.S1_at

Description tigr:9630.m02056
TID=OsAffx.12148.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2145011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21400Os.46012.3.S1_x_at7/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.46012.2.S1_x_at6/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.27088.1.A1_x_at6/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.46012.3.S1_at4/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400OsAffx.30217.1.S1_x_at2/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.45902.1.A1_x_at1/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21410OsAffx.12147.1.S1_at11/112+12712137..12714191hypothetical protein
LOC_Os02g21420NANA2+12717115..12717819hypothetical protein
LOC_Os02g21430Os.19622.1.S1_at10/112+12720934..12728929RNA recognition motif 2 family protein, expressed
LOC_Os02g21440OsAffx.2708.1.S1_x_at11/112+12729564..12729896hypothetical protein
LOC_Os02g21440OsAffx.2708.1.S1_at10/112+12729564..12729896hypothetical protein
LOC_Os02g21450OsAffx.12148.1.S1_at11/112+12730855..12731109hypothetical protein
LOC_Os02g21460Os.27095.1.A1_at8/112+12731905..12735277glutathione S-transferase, putative, expressed
LOC_Os02g21470Os.51469.1.S1_at10/112+12735761..12736170expressed protein
LOC_Os02g21480OsAffx.24368.1.S1_at11/112+12737804..12738814hypothetical protein
LOC_Os02g21490Os.48039.1.A1_at11/112+12741611..12746532Pre-mRNA splicing factor PRP17, putative, expressed
LOC_Os02g21500OsAffx.22314.1.S1_x_at1/112+12751822..12754543hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12148.1.S1_at--73--9171Chr02:12730898..12730922 (25 bp)
TGCCCGTGATGCTGGCGTCGAGCCT
LOC_Os02g21450
OsAffx.12148.1.S1_at--135--4011Chr02:12730913..12730937 (25 bp)
CGTCGAGCCTGCAGGAGGCCTACGC
LOC_Os02g21450
OsAffx.12148.1.S1_at--286--1031Chr02:12730948..12730972 (25 bp)
AGGTCGCCGGGCACCAGCGGGCTTT
LOC_Os02g21450
OsAffx.12148.1.S1_at--104--1631Chr02:12730963..12730987 (25 bp)
AGCGGGCTTTCCAAGGGCCTGAGCA
LOC_Os02g21450
OsAffx.12148.1.S1_at--623--2871Chr02:12730975..12730999 (25 bp)
AAGGGCCTGAGCAGGTTGCCGGGCA
LOC_Os02g21450
OsAffx.12148.1.S1_at--569--1711Chr02:12730999..12731023 (25 bp)
ACCAGCGGGCTTTCTAAGGGCGTCA
LOC_Os02g21450
OsAffx.12148.1.S1_at--676--3391Chr02:12731001..12731025 (25 bp)
CAGCGGGCTTTCTAAGGGCGTCATG
LOC_Os02g21450
OsAffx.12148.1.S1_at--330--3671Chr02:12731008..12731032 (25 bp)
CTTTCTAAGGGCGTCATGGGCTGCA
LOC_Os02g21450
OsAffx.12148.1.S1_at--756--9511Chr02:12731011..12731035 (25 bp)
TCTAAGGGCGTCATGGGCTGCAACA
LOC_Os02g21450
OsAffx.12148.1.S1_at--482--9751Chr02:12731013..12731037 (25 bp)
TAAGGGCGTCATGGGCTGCAACACC
LOC_Os02g21450
OsAffx.12148.1.S1_at--1145--4751Chr02:12731027..12731051 (25 bp)
GCTGCAACACCCTCGGCAAATGCGA
LOC_Os02g21450
Target Sequence 
TGCCCGTGATGCTGGCGTCGAGCCTGCAGGAGGCCTACGCCGGCCGGAGCAGGTCGCCGGGCACCAGCGGGCTTTCCAAG
GGCCTGAGCAGGTTGCCGGGCACCAGCGGGCTTTCTAAGGGCGTCATGGGCTGCAACACCCTCGGCAAATGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis