Browse Element(s) Details


Os.19622.1.S1_at

Description gb:AK068695.1
DB_XREF= gi:32978712
TID=Os.19622.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19622 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013160G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160G01, full insert sequence.
FL= gb:AK068695.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2143010/11RNA recognition motif 2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21400Os.46012.3.S1_x_at7/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.46012.2.S1_x_at6/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.27088.1.A1_x_at6/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.46012.3.S1_at4/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400OsAffx.30217.1.S1_x_at2/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.45902.1.A1_x_at1/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21410OsAffx.12147.1.S1_at11/112+12712137..12714191hypothetical protein
LOC_Os02g21420NANA2+12717115..12717819hypothetical protein
LOC_Os02g21430Os.19622.1.S1_at10/112+12720934..12728929RNA recognition motif 2 family protein, expressed
LOC_Os02g21440OsAffx.2708.1.S1_x_at11/112+12729564..12729896hypothetical protein
LOC_Os02g21440OsAffx.2708.1.S1_at10/112+12729564..12729896hypothetical protein
LOC_Os02g21450OsAffx.12148.1.S1_at11/112+12730855..12731109hypothetical protein
LOC_Os02g21460Os.27095.1.A1_at8/112+12731905..12735277glutathione S-transferase, putative, expressed
LOC_Os02g21470Os.51469.1.S1_at10/112+12735761..12736170expressed protein
LOC_Os02g21480OsAffx.24368.1.S1_at11/112+12737804..12738814hypothetical protein
LOC_Os02g21490Os.48039.1.A1_at11/112+12741611..12746532Pre-mRNA splicing factor PRP17, putative, expressed
LOC_Os02g21500OsAffx.22314.1.S1_x_at1/112+12751822..12754543hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19622.1.S1_at--873--10271Chr02:12727484..12727508 (25 bp)
TTTCCAGAATTCAAGCTTGATGAAT
LOC_Os02g21430
Os.19622.1.S1_at--400--4571Chr02:12727517..12727541 (25 bp)
GCGCTGCCGCCCTATGCTATTTGAT
LOC_Os02g21430
Os.19622.1.S1_at--1050--4871Chr02:12727532..12727556 (25 bp)
GCTATTTGATCCCAAGCATACTGAA
LOC_Os02g21430
Os.19622.1.S1_at--857--2451NONE
AACAATCAGATCCTGTTGAACGGAA
NONE
Os.19622.1.S1_at--623--451Chr02:12728447..12728471 (25 bp)
ATCTCCATGGCCCAGCAAGATGCCA
LOC_Os02g21430
Os.19622.1.S1_at--503--8411Chr02:12728455..12728479 (25 bp)
GGCCCAGCAAGATGCCACACAAGAA
LOC_Os02g21430
Os.19622.1.S1_at--522--2751Chr02:12728475..12728499 (25 bp)
AAGAAAGGCATGACCTCCCTGAAAA
LOC_Os02g21430
Os.19622.1.S1_at--360--4931Chr02:12728482..12728506 (25 bp)
GCATGACCTCCCTGAAAACCCAAGG
LOC_Os02g21430
Os.19622.1.S1_at--1074--9711Chr02:12728530..12728554 (25 bp)
TCAAGTAATCGGCCTACCGGGAGGT
LOC_Os02g21430
Os.19622.1.S1_at--290--5851Chr02:12728550..12728574 (25 bp)
GAGGTTTTTCTGAAGGAGGCTAATT
LOC_Os02g21430
Os.19622.1.S1_at--462--10791Chr02:12728642..12728666 (25 bp)
TTGTTGGTTTGCATTGACGGTGATG
LOC_Os02g21430
Target Sequence 
TTTCCAGAATTCAAGCTTGATGAATGAAGACAAGCGCTGCCGCCCTATGCTATTTGATCCCAAGCATACTGAAAACAACA
ATCAGATCCTGTTGAACGGAANANTTTATCTCCATGGCCCAGCAAGATGCCACACAAGAAAGGCATGACCTCCCTGAAAA
CCCAAGGGAAGATAATTTCAGTTAAAAGATTCAAGTAATCGGCCTACCGGGAGGTTTTTCTGAAGGAGGCTAATTTATCT
GCAGTAGACGCTGACTGTTGGATTGTGAAATGTACAAAACAGAGAGAACTTGATGCCGCATTTTGTTGGTTTGCATTGAC
GGTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis