Browse Element(s) Details


OsAffx.12147.1.S1_at

Description tigr:9630.m02053
TID=OsAffx.12147.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2141011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21379OsAffx.27819.1.S1_x_at1/112+12686872..12688845NA
LOC_Os02g21379Os.31613.1.S1_at1/112+12686872..12688845NA
LOC_Os02g21379OsAffx.28548.1.S1_at1/112+12686872..12688845NA
LOC_Os02g21390NANA2+12693440..12695240hypothetical protein
LOC_Os02g21400Os.46012.3.S1_x_at7/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.46012.2.S1_x_at6/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.27088.1.A1_x_at6/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.46012.3.S1_at4/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400OsAffx.30217.1.S1_x_at2/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.45902.1.A1_x_at1/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21410OsAffx.12147.1.S1_at11/112+12712137..12714191hypothetical protein
LOC_Os02g21420NANA2+12717115..12717819hypothetical protein
LOC_Os02g21430Os.19622.1.S1_at10/112+12720934..12728929RNA recognition motif 2 family protein, expressed
LOC_Os02g21440OsAffx.2708.1.S1_x_at11/112+12729564..12729896hypothetical protein
LOC_Os02g21440OsAffx.2708.1.S1_at10/112+12729564..12729896hypothetical protein
LOC_Os02g21450OsAffx.12148.1.S1_at11/112+12730855..12731109hypothetical protein
LOC_Os02g21460Os.27095.1.A1_at8/112+12731905..12735277glutathione S-transferase, putative, expressed
LOC_Os02g21470Os.51469.1.S1_at10/112+12735761..12736170expressed protein
LOC_Os02g21480OsAffx.24368.1.S1_at11/112+12737804..12738814hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12147.1.S1_at--66--2551Chr02:12712171..12712195 (25 bp)
AACTCCTTGGAGCTCAGCTCTTCCA
LOC_Os02g21410
OsAffx.12147.1.S1_at--991--1571Chr02:12712186..12712210 (25 bp)
AGCTCTTCCATCGTTGCATATCGAT
LOC_Os02g21410
OsAffx.12147.1.S1_at--840--3571Chr02:12712202..12712226 (25 bp)
CATATCGATGATGAGCAGGACGGAC
LOC_Os02g21410
OsAffx.12147.1.S1_at--486--1511Chr02:12712215..12712239 (25 bp)
AGCAGGACGGACGTGGACTTCCAGA
LOC_Os02g21410
OsAffx.12147.1.S1_at--460--8531Chr02:12712228..12712252 (25 bp)
TGGACTTCCAGAGGTTGCGCCAGCG
LOC_Os02g21410
OsAffx.12147.1.S1_at--618--9151Chr02:12712243..12712267 (25 bp)
TGCGCCAGCGCCTGGATAGGATGCA
LOC_Os02g21410
OsAffx.12147.1.S1_at--763--6491Chr02:12712257..12712281 (25 bp)
GATAGGATGCAGGTCATCATGGCCT
LOC_Os02g21410
OsAffx.12147.1.S1_at--809--5051Chr02:12713539..12713561 (23 bp)
GCAGCAAGCTCTGTCGAGCCCTGAA
LOC_Os02g21410
OsAffx.12147.1.S1_at--553--1651Chr02:12713553..12713577 (25 bp)
AGCCCTGAACTCTAACAAACCACGA
LOC_Os02g21410
OsAffx.12147.1.S1_at--140--3291Chr02:12713568..12713592 (25 bp)
CAAACCACGATTTAGCGTTTTGAAG
LOC_Os02g21410
OsAffx.12147.1.S1_at--820--10071Chr02:12713645..12713669 (25 bp)
TAGGCATTGATGGAGCTGTGAGATT
LOC_Os02g21410
Target Sequence
AACTCCTTGGAGCTCAGCTCTTCCATCGTTGCATATCGATGATGAGCAGGACGGACGTGGACTTCCAGAGGTTGCGCCAG
CGCCTGGATAGGATGCAGGTCATCATGGCCTCATCCGCCGGCAGCAAGCTCTGTCGAGCCCTGAACTCTAACAAACCACG
ATTTAGCGTTTTGAAGTTGGGAGGTGGTGAAAAAGTTAGGGGGCAAGGCGGCTTTAGAGGGATGACCGTAGGCATTGATG
GAGCTGTGAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis