Browse Element(s) Details


OsAffx.30217.1.S1_x_at

Description tigr:9637.m03416
TID=OsAffx.30217.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g302003/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g302802/11hypothetical protein
LOC_Os10g137102/11hypothetical protein
LOC_Os02g214002/11retrotransposon protein, putative, unclassified
LOC_Os11g300002/11retrotransposon protein, putative, unclassified
LOC_Os10g022102/11POT family protein
LOC_Os12g181701/11hypothetical protein
LOC_Os01g423101/11hypothetical protein
LOC_Os11g301591/11
LOC_Os12g094401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30160NANA6+17409062..17409777retrotransposon, putative, centromere-specific
LOC_Os06g30179Os.26968.1.S1_at9/116+17410748..17427541Cytochrome P450 family protein, expressed
LOC_Os06g30179Os.27691.1.S1_x_at5/116+17410748..17427541Cytochrome P450 family protein, expressed
LOC_Os06g30179OsAffx.30013.5.S1_x_at3/116+17410748..17427541Cytochrome P450 family protein, expressed
LOC_Os06g30179Os.27691.2.S1_x_at2/116+17410748..17427541Cytochrome P450 family protein, expressed
LOC_Os06g30179Os.56292.1.S1_x_at2/116+17410748..17427541Cytochrome P450 family protein, expressed
LOC_Os06g30179Os.44554.1.A1_at1/116+17410748..17427541Cytochrome P450 family protein, expressed
LOC_Os06g30179Os.56292.1.S1_at1/116+17410748..17427541Cytochrome P450 family protein, expressed
LOC_Os06g30200OsAffx.30217.1.S1_x_at3/116+17428176..17429383transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30200Os.51185.2.S1_at1/116+17428176..17429383transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30200Os.26984.1.A1_at1/116+17428176..17429383transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30210OsAffx.27877.1.S1_at10/116+17433122..17437215expressed protein
LOC_Os06g30220NANA6+17441125..17442234retrotransposon protein, putative, unclassified
LOC_Os06g30230Os.15352.1.S1_at11/116+17442893..17445408expressed protein
LOC_Os06g30240OsAffx.27878.1.S1_x_at11/116+17451506..17451808hypothetical protein
LOC_Os06g30240OsAffx.27878.1.S1_at11/116+17451506..17451808hypothetical protein
LOC_Os06g30250OsAffx.4970.1.S1_at11/116+17453254..17454482expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30217.1.S1_x_at--118--3812Chr09:22824575..22824599 (25 bp)
CTGCTGACAGGTGAGAACCGGTTAG
NONE
OsAffx.30217.1.S1_x_at--549--9112Chr09:22824574..22824598 (25 bp)
TGCTGACAGGTGAGAACCGGTTAGA
NONE
OsAffx.30217.1.S1_x_at--171--4712Chr09:22824573..22824597 (25 bp)
GCTGACAGGTGAGAACCGGTTAGAC
NONE
OsAffx.30217.1.S1_x_at--459--3851Chr09:22824572..22824596 (25 bp)
CTGACAGGTGAGAACCGGTTAGACC
NONE
OsAffx.30217.1.S1_x_at--181--8951Chr09:22824571..22824595 (25 bp)
TGACAGGTGAGAACCGGTTAGACCG
NONE
OsAffx.30217.1.S1_x_at--1087--5631Chr09:22824570..22824594 (25 bp)
GACAGGTGAGAACCGGTTAGACCGG
NONE
OsAffx.30217.1.S1_x_at--1117--5191Chr09:22824564..22824588 (25 bp)
TGAGAACCGGTTAGACCGGGTAGTG
NONE
OsAffx.30217.1.S1_x_at--1104--42529Chr12:14384050..14384281 (25 bp)
CCGGTCAGACCGGAGGTGACTTGAT
NONE
OsAffx.30217.1.S1_x_at--1070--70948Chr12:4945659..4945899 (25 bp)
GTCAGACCGGAGGTGACTTGATGCC
LOC_Os12g09440
OsAffx.30217.1.S1_x_at--7--1272Chr09:22824249..22824273 (25 bp)
AGATAAGGCGACGTCCGGATGGTCA
NONE
OsAffx.30217.1.S1_x_at--913--893Chr06:22539073..22539098 (25 bp)
AGGCGACGTCCGGATGGTCAGATAT
NONE
Target Sequence 
CTGCTGACAGGTGAGAACCGGTTAGACCGGGTAGTGGTTGCCGGTCAGACCGGAGGTGACTTGATGCCTTGGGAGAGTAT
TGCCGGTGATGGATCGGGAGTCGACTTGGAGATAAGGCGACGTCCGGATGGTCAGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30217.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis