Browse Element(s) Details


Os.44554.1.A1_at

Description gb:NM_186178.1
DB_XREF= gi:34899441
GEN=OJ1123_C12.6
TID=Os.44554.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44554 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm (OJ1123_C12.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm (OJ1123_C12.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g546501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g357601/11Serine/threonine-protein kinase SAPK7, putative
LOC_Os06g301791/11Cytochrome P450 family protein, expressed
LOC_Os03g307101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g232001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54610Os.11471.1.S1_at8/114+32257548..32258515hypothetical protein
LOC_Os04g54610OsAffx.26604.1.S1_at5/114+32257548..32258515hypothetical protein
LOC_Os04g54620Os.12999.1.S1_at11/114+32259622..32260550expressed protein
LOC_Os04g54630Os.11651.1.S1_at11/114+32261944..32263284expressed protein
LOC_Os04g54640Os.24768.1.S1_x_at11/114+32263959..32266419expressed protein
LOC_Os04g54640OsAffx.4176.1.S1_at11/114+32263959..32266419expressed protein
LOC_Os04g54640Os.7327.1.S1_a_at1/114+32263959..32266419expressed protein
LOC_Os04g54650Os.44554.1.A1_at1/114+32276611..32284480retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g54650Os.27691.1.S1_x_at1/114+32276611..32284480retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g54690NANA4+32285640..32288903retrotransposon protein, putative, unclassified
LOC_Os04g54700NANA4+32289519..32295661retrotransposon protein, putative, unclassified
LOC_Os04g54660OsAffx.21171.4.S1_x_at3/114+32298203..32303093retrotransposon protein, putative, unclassified
LOC_Os04g54660OsAffx.21171.3.S1_x_at2/114+32298203..32303093retrotransposon protein, putative, unclassified
LOC_Os04g54660OsAffx.21171.4.S1_at2/114+32298203..32303093retrotransposon protein, putative, unclassified
LOC_Os04g54660OsAffx.20729.1.S1_x_at1/114+32298203..32303093retrotransposon protein, putative, unclassified
LOC_Os04g54670OsAffx.14415.1.S1_at11/114+32304113..32312191retrotransposon protein, putative, unclassified, expressed
LOC_Os04g54670OsAffx.22711.2.S1_x_at2/114+32304113..32312191retrotransposon protein, putative, unclassified, expressed
LOC_Os04g54670OsAffx.22711.2.S1_at2/114+32304113..32312191retrotransposon protein, putative, unclassified, expressed
LOC_Os04g54670OsAffx.8420.1.S1_at1/114+32304113..32312191retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44554.1.A1_at--345--10679Chr12:14520760..14520780 (21 bp)
TTCCGGCTTCGTCCGTGCTGTCGAG
NONE
Os.44554.1.A1_at--1133--31950Chr11:6005440..6005667 (25 bp)
CAAGGCTTAGCTCCATGGAAAAACC
NONE
Os.44554.1.A1_at--444--5511Chr07:596402..596426 (25 bp)
GAAAAACCTGGTTCCATTGAAGCTG
NONE
Os.44554.1.A1_at--371--2631Chr07:596398..596422 (25 bp)
AACCTGGTTCCATTGAAGCTGAGGG
NONE
Os.44554.1.A1_at--931--6191Chr07:596365..596389 (25 bp)
GAGGCTTTGAGGGTCTCACTGCATG
NONE
Os.44554.1.A1_at--657--8891Chr07:596358..596382 (25 bp)
TGAGGGTCTCACTGCATGCCAGCAT
NONE
Os.44554.1.A1_at--748--7811Chr07:596354..596378 (25 bp)
GGTCTCACTGCATGCCAGCATCCAA
NONE
Os.44554.1.A1_at--974--4411Chr07:596341..596365 (25 bp)
GCCAGCATCCAAGAAGTAGGAAGAA
NONE
Os.44554.1.A1_at--1027--5371Chr07:596322..596346 (25 bp)
GAAGAAGCAGCTGATCTGCCGGATA
NONE
Os.44554.1.A1_at--615--2711Chr07:596318..596342 (25 bp)
AAGCAGCTGATCTGCCGGATAGAGG
NONE
Os.44554.1.A1_at--904--6491NONE
GATAGAGGGCAGTCGCTCCGCCGCT
NONE
Target Sequence 
TTCCGGCTTCGTCCGTGCTGTCGAGGATGCCTGTGGAGTGGTGTTCCCGCTGCAGTCCAAGTCAAGGCTTAGCTCCATGG
AAAAACCTGGTTCCATTGAAGCTGAGGGGAGAGCTGGAGGCTTTGAGGGTCTCACTGCATGCCAGCATCCAAGAAGTAGG
AAGAAGCAGCTGATCTGCCGGATAGAGGGCAGTCGCTCCGCCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44554.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis