Browse Element(s) Details


OsAffx.14415.1.S1_at

Description tigr:9632.m05315
TID=OsAffx.14415.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ulp1 protease family, C-terminal catalytic domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5468011/11Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os04g5467011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54690NANA4+32285640..32288903retrotransposon protein, putative, unclassified
LOC_Os04g54700NANA4+32289519..32295661retrotransposon protein, putative, unclassified
LOC_Os04g54660OsAffx.21171.4.S1_x_at3/114+32298203..32303093retrotransposon protein, putative, unclassified
LOC_Os04g54660OsAffx.21171.3.S1_x_at2/114+32298203..32303093retrotransposon protein, putative, unclassified
LOC_Os04g54660OsAffx.21171.4.S1_at2/114+32298203..32303093retrotransposon protein, putative, unclassified
LOC_Os04g54660OsAffx.20729.1.S1_x_at1/114+32298203..32303093retrotransposon protein, putative, unclassified
LOC_Os04g54670OsAffx.14415.1.S1_at11/114+32304113..32312191retrotransposon protein, putative, unclassified, expressed
LOC_Os04g54670OsAffx.22711.2.S1_x_at2/114+32304113..32312191retrotransposon protein, putative, unclassified, expressed
LOC_Os04g54670OsAffx.22711.2.S1_at2/114+32304113..32312191retrotransposon protein, putative, unclassified, expressed
LOC_Os04g54670OsAffx.8420.1.S1_at1/114+32304113..32312191retrotransposon protein, putative, unclassified, expressed
LOC_Os04g54680OsAffx.14415.1.S1_at11/114+32312474..32318134Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os04g54710OsAffx.22711.4.A1_x_at1/114+32319621..32321930retrotransposon protein, putative, unclassified
LOC_Os04g54720OsAffx.14416.1.S1_at11/114+32326451..32328235hypothetical protein
LOC_Os04g54730OsAffx.26605.1.S1_at11/114+32330088..32332159hypothetical protein
LOC_Os04g54740Os.49234.1.A1_at10/114+32333422..32337248expressed protein
LOC_Os04g54759OsAffx.14417.1.S1_s_at11/114+32337917..32346340expressed protein
LOC_Os04g54759Os.53699.1.S1_at11/114+32337917..32346340expressed protein
LOC_Os04g54759OsAffx.14417.1.S1_at7/114+32337917..32346340expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14415.1.S1_at--70--2352Chr04:32316810..32316834 (25 bp)
AAAGAATCTTTCTCTCACCAGTAGA
LOC_Os04g54680
OsAffx.14415.1.S1_at--711--2992Chr04:32317459..32317483 (25 bp)
AATGATTGTGGATGCACTCCCGGTT
LOC_Os04g54680
OsAffx.14415.1.S1_at--106--5092Chr04:32317472..32317496 (25 bp)
GCACTCCCGGTTCTGAGATCAGGTA
LOC_Os04g54680
OsAffx.14415.1.S1_at--919--9632Chr04:32317490..32317514 (25 bp)
TCAGGTAGCAGGACCACCACGTTAA
LOC_Os04g54680
OsAffx.14415.1.S1_at--1072--8152Chr04:32317516..32317619 (25 bp)
GGAAACAACTATTTACTGCCCTGTT
LOC_Os04g54680
OsAffx.14415.1.S1_at--586--9172Chr04:32317611..32317635 (25 bp)
TGCCCTGTTCTCTTCCAAGGAGAAT
LOC_Os04g54680
OsAffx.14415.1.S1_at--509--10372Chr04:32317656..32317680 (25 bp)
TTTTCAAGCTCAAACCAGGTCCATG
LOC_Os04g54680
OsAffx.14415.1.S1_at--928--2192Chr04:32317690..32317714 (25 bp)
ACAAAGATACCTTGGCCAGCGTGAA
LOC_Os04g54680
OsAffx.14415.1.S1_at--1047--8432Chr04:32317703..32317727 (25 bp)
GGCCAGCGTGAAACCATTTTGTATT
LOC_Os04g54680
OsAffx.14415.1.S1_at--437--192Chr04:32317784..32317808 (25 bp)
ATTTCCTGACCGCAAAGTGGCATAT
LOC_Os04g54680
OsAffx.14415.1.S1_at--662--8292Chr04:32318043..32318067 (25 bp)
GGCTTTTGCCGTACTTATTGAACCA
LOC_Os04g54680
Target Sequence 
AAAGAATCTTTCTCTCACCAGTAGAGAAGGATGGCCAAGATTTGGAGAAAATGATTGTGGATGCACTCCCGGTTCTGAGA
TCAGGTAGCAGGACCACCACGTTAAAGGAAACAACTATTTACTGCCCTGTTCTCTTCCAAGGAGAATGGATTGTTGCATG
TTGTGTGTTTTCAAGCTCAAACCAGGTCCATGTTTTTTGCCACAAAGATACCTTGGCCAGCGTGAAACCATTTTGTATTG
ATCTGGGAGCCAAAGCAAACTCAGCTTTAAAAAGATGCGGATACAACCAAGTAAAATTTCCTGACCGCAAAGTGGCATAT
ACTGGTACCAACATAAAGGTCAATGATAGTGCGTTTGCATCAATGTATTTCATCGAGAATTTCGGGACTTCTGGAGAAAT
ACATTTCAACCGGTTTTTAGAGAAGAATGATGAGGTGAAGGATGAATTCATTAAAGATGTGAAGTTAGGGCTTTTGCCGT
ACTTATTGAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis