Browse Element(s) Details


OsAffx.14417.1.S1_s_at

Description tigr:9632.m05324
TID=OsAffx.14417.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5475911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54680OsAffx.14415.1.S1_at11/114+32312474..32318134Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os04g54710OsAffx.22711.4.A1_x_at1/114+32319621..32321930retrotransposon protein, putative, unclassified
LOC_Os04g54720OsAffx.14416.1.S1_at11/114+32326451..32328235hypothetical protein
LOC_Os04g54730OsAffx.26605.1.S1_at11/114+32330088..32332159hypothetical protein
LOC_Os04g54740Os.49234.1.A1_at10/114+32333422..32337248expressed protein
LOC_Os04g54759OsAffx.14417.1.S1_s_at11/114+32337917..32346340expressed protein
LOC_Os04g54759Os.53699.1.S1_at11/114+32337917..32346340expressed protein
LOC_Os04g54759OsAffx.14417.1.S1_at7/114+32337917..32346340expressed protein
LOC_Os04g54780NANA4+32350681..32353533hypothetical protein
LOC_Os04g54790Os.28255.1.S1_at11/114+32355340..32362610ABC1 family protein, expressed
LOC_Os04g54800Os.35335.1.A1_s_at11/114+32363062..32366659Shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os04g54810Os.48101.1.S1_at7/114+32370051..32376828Beta-D-xylosidase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14417.1.S1_s_at--847--8351Chr04:32346133..32346157 (25 bp)
GGCGGCAAACTCATGCCTCTCGTAT
LOC_Os04g54759
OsAffx.14417.1.S1_s_at--421--2391Chr04:32346127..32346151 (25 bp)
AAACTCATGCCTCTCGTATCTCTGG
LOC_Os04g54759
OsAffx.14417.1.S1_s_at--449--591Chr04:32346121..32346145 (25 bp)
ATGCCTCTCGTATCTCTGGCGACAT
LOC_Os04g54759
OsAffx.14417.1.S1_s_at--538--6891Chr04:32346112..32346136 (25 bp)
GTATCTCTGGCGACATCCAACGATG
LOC_Os04g54759
OsAffx.14417.1.S1_s_at--609--3771Chr04:32346108..32346132 (25 bp)
CTCTGGCGACATCCAACGATGACGT
LOC_Os04g54759
OsAffx.14417.1.S1_s_at--334--8471Chr04:32346105..32346129 (25 bp)
TGGCGACATCCAACGATGACGTGAA
LOC_Os04g54759
OsAffx.14417.1.S1_s_at--571--2091Chr04:32346100..32346124 (25 bp)
ACATCCAACGATGACGTGAAGCTGA
LOC_Os04g54759
OsAffx.14417.1.S1_s_at--214--2591Chr04:32346094..32346118 (25 bp)
AACGATGACGTGAAGCTGATTGGGA
LOC_Os04g54759
OsAffx.14417.1.S1_s_at--988--1592Chr05:4421311..4421681 (25 bp)
AGCTGATTGGGAGCGCATGCAACGA
NONE
OsAffx.14417.1.S1_s_at--1048--12Chr05:4421662..4421683 (22 bp)
ATTGGGAGCGCATGCAACGAATCAT
NONE
OsAffx.14417.1.S1_s_at--1107--5872Chr12:12480473..12480493 (21 bp)
GAGCGCATGCAACGAATCATGCCAT
NONE
Target Sequence 
GGCGGCAAACTCATGCCTCTCGTATCTCTGGCGACATCCAACGATGACGTGAAGCTGATTGGGAGCGCATGCAACGAATC
ATGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14417.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis