Browse Element(s) Details


OsAffx.14417.1.S1_at

Description tigr:9632.m05324
TID=OsAffx.14417.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g547597/11expressed protein
LOC_Os09g310196/11ubiquitin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54680OsAffx.14415.1.S1_at11/114+32312474..32318134Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os04g54710OsAffx.22711.4.A1_x_at1/114+32319621..32321930retrotransposon protein, putative, unclassified
LOC_Os04g54720OsAffx.14416.1.S1_at11/114+32326451..32328235hypothetical protein
LOC_Os04g54730OsAffx.26605.1.S1_at11/114+32330088..32332159hypothetical protein
LOC_Os04g54740Os.49234.1.A1_at10/114+32333422..32337248expressed protein
LOC_Os04g54759OsAffx.14417.1.S1_s_at11/114+32337917..32346340expressed protein
LOC_Os04g54759Os.53699.1.S1_at11/114+32337917..32346340expressed protein
LOC_Os04g54759OsAffx.14417.1.S1_at7/114+32337917..32346340expressed protein
LOC_Os04g54780NANA4+32350681..32353533hypothetical protein
LOC_Os04g54790Os.28255.1.S1_at11/114+32355340..32362610ABC1 family protein, expressed
LOC_Os04g54800Os.35335.1.A1_s_at11/114+32363062..32366659Shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os04g54810Os.48101.1.S1_at7/114+32370051..32376828Beta-D-xylosidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0016567biological_processprotein ubiquitination
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14417.1.S1_at--755--1231NONE
AGATTGAAACCGCTTGGGCCATATA
NONE
OsAffx.14417.1.S1_at--863--6591NONE
GATTGAAACCGCTTGGGCCATATAC
NONE
OsAffx.14417.1.S1_at--1064--51NONE
ATTGAAACCGCTTGGGCCATATACA
NONE
OsAffx.14417.1.S1_at--1138--10731NONE
TTGAAACCGCTTGGGCCATATACAC
NONE
OsAffx.14417.1.S1_at--785--2612Chr09:18668033..18668053 (21 bp)
AACCGCTTGGGCCATATACACGGAC
LOC_Os09g31019
OsAffx.14417.1.S1_at--2--4132Chr09:18668033..18668056 (24 bp)
CGCTTGGGCCATATACACGGACCAG
LOC_Os09g31019
OsAffx.14417.1.S1_at--801--4932Chr09:18668033..18668057 (25 bp)
GCTTGGGCCATATACACGGACCAGC
LOC_Os09g31019
OsAffx.14417.1.S1_at--944--10832Chr09:18668035..18668059 (25 bp)
TTGGGCCATATACACGGACCAGCCC
LOC_Os09g31019
OsAffx.14417.1.S1_at--479--7552Chr09:18668037..18668061 (25 bp)
GGGCCATATACACGGACCAGCCCAA
LOC_Os09g31019
OsAffx.14417.1.S1_at--543--1931Chr04:32345427..32345451 (25 bp)
ACGGACCAGCCCAACAGCCAGAAGC
LOC_Os04g54759
OsAffx.14417.1.S1_at--589--9492Chr09:18668080..18668110 (25 bp)
TCTCCATGGGCTCGTGCCACGTGTC
LOC_Os09g31019
Target Sequence 
AGATTGAAACCGCTTGGGCCATATACACGGACCAGCCCAACAGCCAGAAGCCTGTTGCTCTCCATGGGCTCGTGCCACGT
GTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis