Browse Element(s) Details


Os.49234.1.A1_at

Description gb:AK103423.1
DB_XREF= gi:32988632
TID=Os.49234.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49234 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033128K14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128K14, full insert sequence.
FL= gb:AK103423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5474010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54670OsAffx.14415.1.S1_at11/114+32304113..32312191retrotransposon protein, putative, unclassified, expressed
LOC_Os04g54670OsAffx.22711.2.S1_x_at2/114+32304113..32312191retrotransposon protein, putative, unclassified, expressed
LOC_Os04g54670OsAffx.22711.2.S1_at2/114+32304113..32312191retrotransposon protein, putative, unclassified, expressed
LOC_Os04g54670OsAffx.8420.1.S1_at1/114+32304113..32312191retrotransposon protein, putative, unclassified, expressed
LOC_Os04g54680OsAffx.14415.1.S1_at11/114+32312474..32318134Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os04g54710OsAffx.22711.4.A1_x_at1/114+32319621..32321930retrotransposon protein, putative, unclassified
LOC_Os04g54720OsAffx.14416.1.S1_at11/114+32326451..32328235hypothetical protein
LOC_Os04g54730OsAffx.26605.1.S1_at11/114+32330088..32332159hypothetical protein
LOC_Os04g54740Os.49234.1.A1_at10/114+32333422..32337248expressed protein
LOC_Os04g54759OsAffx.14417.1.S1_s_at11/114+32337917..32346340expressed protein
LOC_Os04g54759Os.53699.1.S1_at11/114+32337917..32346340expressed protein
LOC_Os04g54759OsAffx.14417.1.S1_at7/114+32337917..32346340expressed protein
LOC_Os04g54780NANA4+32350681..32353533hypothetical protein
LOC_Os04g54790Os.28255.1.S1_at11/114+32355340..32362610ABC1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49234.1.A1_at--311--8591Chr04:32336425..32336449 (25 bp)
TGGTTTGGTCATTGTGCCCTGGCTA
LOC_Os04g54740
Os.49234.1.A1_at--182--7271Chr04:32336438..32336462 (25 bp)
GTGCCCTGGCTATGAACCTAAAATG
LOC_Os04g54740
Os.49234.1.A1_at--857--7432Chr04:32336503..32336527 (25 bp)
GTGTACAATATCTAGAGTGGCCTTT
LOC_Os04g54740
Os.49234.1.A1_at--803--8451Chr04:32336520..32336544 (25 bp)
TGGCCTTTTATCGAATTCCACTAGG
LOC_Os04g54740
Os.49234.1.A1_at--732--8031Chr04:32336543..32336567 (25 bp)
GGAGTGACACTCCATCAATTTTATC
LOC_Os04g54740
Os.49234.1.A1_at--211--8931Chr04:32336717..32336741 (25 bp)
TGACCAGTGGCTTGCATCACCAAAG
LOC_Os04g54740
Os.49234.1.A1_at--111--4971Chr04:32336730..32336754 (25 bp)
GCATCACCAAAGCAATCGACTCAGT
LOC_Os04g54740
Os.49234.1.A1_at--221--10351Chr04:32337104..32337128 (25 bp)
TTTACCAATCTTGACTCAGCCAGTG
LOC_Os04g54740
Os.49234.1.A1_at--82--1271Chr04:32337144..32337168 (25 bp)
AGATTTTATCTTGCTCCTCACTTAA
LOC_Os04g54740
Os.49234.1.A1_at--291--6411Chr04:32337203..32337227 (25 bp)
GATCTGTTTTTCTGGTGTTCTGTAC
LOC_Os04g54740
Os.49234.1.A1_at--305--1551Chr04:32337244..32337268 (25 bp)
AGCTTGCCAATCACTTTTTACTGTC
NONE
Target Sequence 
TGGTTTGGTCATTGTGCCCTGGCTATGAACCTAAAATGGAGGAAAATAAATAAGCCAGTTGGAGAGTGGCATTTTAATGT
GTACAATATCTAGAGTGGCCTTTTATCGAATTCCACTAGGAGTGACACTCCATCAATTTTATCATGCTGATAGTAGTTCA
AGTTGTCGTATTGCTTGAGAATGAGCTGGAGTTGTTTGTTGGATTGCTGTAGGTATGATTGTTGCTGCCATTTGAGTAAA
TCGGGAAAATATTTCAAAGTTAACCTGACTTGCTAAAGTACAGGAAGGAGGCTGACCAGTGGCTTGCATCACCAAAGCAA
TCGACTCAGTCTTGAAGGAAATTGGAGATTTCGAGAACTGGATGAAGATCATGGATTTTGATTGTAAAAGTATAAATGCA
GCCATCCCTAACATTTACCAATCTTGACTCAGCCAGTGGCTAATGTTAGGAAGAGATTTTATCTTGCTCCTCACTTAACA
ATTTTTATCTCAGATATGAACTCTGTTGTATAGATCTGTTTTTCTGGTGTTCTGTACACAATTGAAAAACAAAAGCTTGC
CAATCACTTTTTACTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49234.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis