Browse Element(s) Details


Os.53699.1.S1_at

Description gb:AK074005.1
DB_XREF= gi:32984028
TID=Os.53699.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53699 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076C24, full insert sequence.
FL= gb:AK074005.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5475911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54680OsAffx.14415.1.S1_at11/114+32312474..32318134Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os04g54710OsAffx.22711.4.A1_x_at1/114+32319621..32321930retrotransposon protein, putative, unclassified
LOC_Os04g54720OsAffx.14416.1.S1_at11/114+32326451..32328235hypothetical protein
LOC_Os04g54730OsAffx.26605.1.S1_at11/114+32330088..32332159hypothetical protein
LOC_Os04g54740Os.49234.1.A1_at10/114+32333422..32337248expressed protein
LOC_Os04g54759OsAffx.14417.1.S1_s_at11/114+32337917..32346340expressed protein
LOC_Os04g54759Os.53699.1.S1_at11/114+32337917..32346340expressed protein
LOC_Os04g54759OsAffx.14417.1.S1_at7/114+32337917..32346340expressed protein
LOC_Os04g54780NANA4+32350681..32353533hypothetical protein
LOC_Os04g54790Os.28255.1.S1_at11/114+32355340..32362610ABC1 family protein, expressed
LOC_Os04g54800Os.35335.1.A1_s_at11/114+32363062..32366659Shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os04g54810Os.48101.1.S1_at7/114+32370051..32376828Beta-D-xylosidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53699.1.S1_at--168--2191Chr04:32338367..32338391 (25 bp)
ACACTTTTGTCGGTAAGCTCGGCAC
LOC_Os04g54759
Os.53699.1.S1_at--1028--1572Chr05:473080..473099 (20 bp)
AGCTCGGCACCGTGGAGTTGAGATA
NONE
Os.53699.1.S1_at--1141--8532Chr07:15898057..15898225 (25 bp)
TGGAGAAGTCGCAGCTTGCACCACC
NONE
Os.53699.1.S1_at--178--5491Chr04:32338205..32338229 (25 bp)
GAACATGCTGTGTGATGGCCGACAA
LOC_Os04g54759
Os.53699.1.S1_at--1110--6252Chr05:472901..472925 (25 bp)
GATGTCCAGTTATCTCGACGTGTCA
NONE
Os.53699.1.S1_at--553--5391Chr04:32338132..32338156 (25 bp)
GAAGCTTCTGTTGACCGTTGTTAAT
LOC_Os04g54759
Os.53699.1.S1_at--451--6691Chr04:32338095..32338119 (25 bp)
GTTCCAACTGGCTGTGTTACGCAAA
LOC_Os04g54759
Os.53699.1.S1_at--132--6771Chr04:32337993..32338017 (25 bp)
GTTACTTGGTCTCTTATGGTCTGAT
LOC_Os04g54759
Os.53699.1.S1_at--88--3291Chr04:32337966..32337990 (25 bp)
CAAATGAGGCGCAGTACACCGTACT
LOC_Os04g54759
Os.53699.1.S1_at--143--1791Chr04:32337949..32337973 (25 bp)
ACCGTACTTGTGAAGCCTGTGGCGC
LOC_Os04g54759
Os.53699.1.S1_at--905--3891Chr04:32337933..32337957 (25 bp)
CTGTGGCGCCTTACTTAATCATATA
LOC_Os04g54759
Target Sequence 
ACACTTTTGTCGGTAAGCTCGGCACCGTGGAGTTGAGATATGCAGTTATTAAAGACGCAGTGGAGGCTACTGTTGAAATC
AAGGTTGTGGAGGGATATTTCTGTGGAGAAGTCGCAGCTTGCACCACCAACATTCAAGATAAAGTTGTTCTTCTTGATAG
CAGAACATGCTGTGTGATGGCCGACAATCTTGATGTCCAGTTATCTCGACGTGTCATGGCTGTCCACAACAAGGAGAAGC
TTCTGTTGACCGTTGTTAATCAGGATGACGAAGTTCCAACTGGCTGTGTTACGCAAACCATTGATTTTACTCCAAAATTC
AATGGTTCAGATGTGACTGAAGTTACTTGTGGTAGTGTTAAGATGCTTGTGAAGGTTACTTGGTCTCTTATGGTCTGATG
ACAAATGAGGCGCAGTACACCGTACTTGTGAAGCCTGTGGCGCCTTACTTAATCATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis