Browse Element(s) Details


Os.28255.1.S1_at

Description gb:AK070519.1
DB_XREF= gi:32980543
TID=Os.28255.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.28255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056A15, full insert sequence.
FL= gb:AK070519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5479011/11ABC1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54730OsAffx.26605.1.S1_at11/114+32330088..32332159hypothetical protein
LOC_Os04g54740Os.49234.1.A1_at10/114+32333422..32337248expressed protein
LOC_Os04g54759OsAffx.14417.1.S1_s_at11/114+32337917..32346340expressed protein
LOC_Os04g54759Os.53699.1.S1_at11/114+32337917..32346340expressed protein
LOC_Os04g54759OsAffx.14417.1.S1_at7/114+32337917..32346340expressed protein
LOC_Os04g54780NANA4+32350681..32353533hypothetical protein
LOC_Os04g54790Os.28255.1.S1_at11/114+32355340..32362610ABC1 family protein, expressed
LOC_Os04g54800Os.35335.1.A1_s_at11/114+32363062..32366659Shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os04g54810Os.48101.1.S1_at7/114+32370051..32376828Beta-D-xylosidase, putative, expressed
LOC_Os04g54820Os.27125.1.A1_at11/114+32381297..32384241Programmed cell death protein 2, C-terminal domain containing protein, expressed
LOC_Os04g54830Os.36834.1.S1_at10/114+32386034..32389565expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28255.1.S1_at--335--1011Chr04:32361584..32361969 (25 bp)
AGGATTCATCTCCAATTCCAGGATA
LOC_Os04g54790
Os.28255.1.S1_at--1120--451Chr04:32362036..32362060 (25 bp)
ATCTCTACCAGAGTTGTTGCCAGTA
LOC_Os04g54790
Os.28255.1.S1_at--1014--1171Chr04:32362057..32362078 (22 bp)
AGTACTTTCTGTCATTCCTGAGCTT
LOC_Os04g54790
Os.28255.1.S1_at--230--1731Chr04:32362213..32362237 (25 bp)
ACCAGAGTCCCAACAGCAGTTTCTC
LOC_Os04g54790
Os.28255.1.S1_at--1047--171Chr04:32362251..32362275 (25 bp)
ATTTAACTAATCGTCTTCTGTCTCG
LOC_Os04g54790
Os.28255.1.S1_at--590--8711Chr04:32362269..32362293 (25 bp)
TGTCTCGCGCTGTTGCAAGAACCAT
LOC_Os04g54790
Os.28255.1.S1_at--1113--2891Chr04:32362325..32362349 (25 bp)
AAGGTACACATTTCCAATCTCTGCT
LOC_Os04g54790
Os.28255.1.S1_at--1098--2231Chr04:32362414..32362438 (25 bp)
AAATAGTACCACTGCCTTCTAAGCT
LOC_Os04g54790
Os.28255.1.S1_at--736--9511Chr04:32362431..32362455 (25 bp)
TCTAAGCTAGAAATCCAGGATCCGT
LOC_Os04g54790
Os.28255.1.S1_at--883--7971Chr04:32362448..32362472 (25 bp)
GGATCCGTCTTATTATTCACCATGA
LOC_Os04g54790
Os.28255.1.S1_at--267--7351Chr04:32362524..32362548 (25 bp)
GTGACAATACAGTTCTTTTCGGGAA
LOC_Os04g54790
Target Sequence 
AGGATTCATCTCCAATTCCAGGATACAATAGCACTGAGGAGAACGAAGGTGATAGTACAGATGAGATTTCTCTTGTGTTA
TATGAAATGAGATCTCTACCAGAGTTGTTGCCAGTACTTTCTGTCATTCCTGAGCTTCCACCAGAGTCCCAACAGCAGTT
TCTCCTCCTGCCAGCAGATTTAACTAATCGTCTTCTGTCTCGCGCTGTTGCAAGAACCATCAGAAGAATATTCATATGAA
GATAGAGCATAAAGGTACACATTTCCAATCTCTGCTACATGAAATATTTTTATTTAATTTTTTTTGAGAAAGCGCTAAAT
GTTCATAGAAATTTTCCCCCAAATAGTACCACTGCCTTCTAAGCTAGAAATCCAGGATCCGTCTTATTATTCACCATGAC
TAATTTTGAGTTGTAGTTAGTTCAAAAAAAAATGAATTGTAATTCTTCATGTGACAATACAGTTCTTTTCGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis