Browse Element(s) Details


Os.27125.1.A1_at

Description gb:AK065522.1
DB_XREF= gi:32975540
TID=Os.27125.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013026G17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026G17, full insert sequence.
FL= gb:AK065522.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5482011/11Programmed cell death protein 2, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54790Os.28255.1.S1_at11/114+32355340..32362610ABC1 family protein, expressed
LOC_Os04g54800Os.35335.1.A1_s_at11/114+32363062..32366659Shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os04g54810Os.48101.1.S1_at7/114+32370051..32376828Beta-D-xylosidase, putative, expressed
LOC_Os04g54820Os.27125.1.A1_at11/114+32381297..32384241Programmed cell death protein 2, C-terminal domain containing protein, expressed
LOC_Os04g54830Os.36834.1.S1_at10/114+32386034..32389565expressed protein
LOC_Os04g54840Os.48809.1.S1_at10/114+32390816..32399859DNA-directed RNA polymerase, putative, expressed
LOC_Os04g54850Os.351.1.S1_at10/114+32406740..32410067Pectinesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006915biological_processapoptosis
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27125.1.A1_at--583--6271Chr04:32383145..32383169 (25 bp)
GATGTCTCCATTGTCATATTTCCTC
LOC_Os04g54820
Os.27125.1.A1_at--538--6551Chr04:32383194..32383218 (25 bp)
GATTATGCACCTGATGGCTGGACCT
LOC_Os04g54820
Os.27125.1.A1_at--587--5831Chr04:32383214..32383238 (25 bp)
GACCTGGCTGACTCTTATCATATAC
LOC_Os04g54820
Os.27125.1.A1_at--530--131Chr04:32383860..32383884 (25 bp)
ATTAAAGTCCTCCAGTGCCTACAAT
LOC_Os04g54820
Os.27125.1.A1_at--940--1731Chr04:32383898..32383922 (25 bp)
ACCATTCCTGGTTTGAGTGCGTGAT
LOC_Os04g54820
Os.27125.1.A1_at--109--5271Chr04:32383933..32383957 (25 bp)
GAATGCTCTTTTCCAGTCGTTGAGG
LOC_Os04g54820
Os.27125.1.A1_at--173--8011Chr04:32383982..32384006 (25 bp)
GGAGGCGATCTACTATACGTGTTCT
LOC_Os04g54820
Os.27125.1.A1_at--96--9931Chr04:32383997..32384021 (25 bp)
TACGTGTTCTTGTTGACATTCCCTG
LOC_Os04g54820
Os.27125.1.A1_at--1110--7071Chr04:32384091..32384115 (25 bp)
GTCAAGCACTTGGTCGTTTCTGTAG
LOC_Os04g54820
Os.27125.1.A1_at--672--7471Chr04:32384115..32384139 (25 bp)
GTGTGATCCTTTGTACTTTGTAGCA
LOC_Os04g54820
Os.27125.1.A1_at--935--4951Chr04:32384137..32384161 (25 bp)
GCATAGTGTTGCCTTGTCAATCCCA
LOC_Os04g54820
Target Sequence 
GATGTCTCCATTGTCATATTTCCTCCATGAAGCTGGTGATGGTTCCTCAGATTATGCACCTGATGGCTGGACCTGGCTGA
CTCTTATCATATACACCTGCTCAAAGAGCTGCTGCCCATCCTCCTGTGTTGGAAAGCCAGGCAGCTGCTGCTGGGGAGTA
GCAGAGGAGGAGATAATGATTCAGGAGGATTAAAGTCCTCCAGTGCCTACAATGTTGAGAAACCAAACCATTCCTGGTTT
GAGTGCGTGATGTGCGTTTTCGAATGCTCTTTTCCAGTCGTTGAGGTCGTAAAGCTATCTGTAGTTCATAGGAGGCGATC
TACTATACGTGTTCTTGTTGACATTCCCTGTTTCAGATTCTTTTAAATCATGTATTCCTGTTGTTTGTCTGGGTTGTCAA
CTCCAATGAGGGAGAACATGTCAAGCACTTGGTCGTTTCTGTAGTGTGATCCTTTGTACTTTGTAGCATAGTGTTGCCTT
GTCAATCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27125.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis