Browse Element(s) Details


Os.35335.1.A1_s_at

Description gb:AK067948.1
DB_XREF= gi:32977966
TID=Os.35335.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.35335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123F09, full insert sequence.
FL= gb:AK067948.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5480011/11Shikimate kinase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54759OsAffx.14417.1.S1_s_at11/114+32337917..32346340expressed protein
LOC_Os04g54759Os.53699.1.S1_at11/114+32337917..32346340expressed protein
LOC_Os04g54759OsAffx.14417.1.S1_at7/114+32337917..32346340expressed protein
LOC_Os04g54780NANA4+32350681..32353533hypothetical protein
LOC_Os04g54790Os.28255.1.S1_at11/114+32355340..32362610ABC1 family protein, expressed
LOC_Os04g54800Os.35335.1.A1_s_at11/114+32363062..32366659Shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os04g54810Os.48101.1.S1_at7/114+32370051..32376828Beta-D-xylosidase, putative, expressed
LOC_Os04g54820Os.27125.1.A1_at11/114+32381297..32384241Programmed cell death protein 2, C-terminal domain containing protein, expressed
LOC_Os04g54830Os.36834.1.S1_at10/114+32386034..32389565expressed protein
LOC_Os04g54840Os.48809.1.S1_at10/114+32390816..32399859DNA-directed RNA polymerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35335.1.A1_s_at--58--5571Chr04:32363937..32363961 (25 bp)
GAAAGGGTCAACAATCTGGTTAGAT
LOC_Os04g54800
Os.35335.1.A1_s_at--968--1291Chr04:32363916..32363940 (25 bp)
AGATGTTCCATTGGATGCACTTGCA
LOC_Os04g54800
Os.35335.1.A1_s_at--619--4751Chr04:32363882..32363906 (25 bp)
GCTGCAGTAGGAACTGCTTCTCGGC
LOC_Os04g54800
Os.35335.1.A1_s_at--947--2731Chr04:32363845..32363869 (25 bp)
AAGAATCTGGTGATCCTTATGCAAA
LOC_Os04g54800
Os.35335.1.A1_s_at--470--2391Chr04:32363726..32363750 (25 bp)
AAACTGACTGCACTTTTTGAACAAA
LOC_Os04g54800
Os.35335.1.A1_s_at--592--5711Chr04:32363696..32363720 (25 bp)
GACTCATATGCTAATGCTGATGCCA
LOC_Os04g54800
Os.35335.1.A1_s_at--771--4371Chr04:32363517..32363699 (25 bp)
GCCAGGGTTTCACTCGAACATATTG
LOC_Os04g54800
Os.35335.1.A1_s_at--280--5631Chr04:32363464..32363488 (25 bp)
GACACTTACACCAAGTGCCATTGCT
LOC_Os04g54800
Os.35335.1.A1_s_at--53--4451Chr04:32363375..32363472 (25 bp)
GCCATTGCTATTGAGGCATTGCTAA
LOC_Os04g54800
Os.35335.1.A1_s_at--960--511Chr04:32363244..32363268 (25 bp)
ATCGCATATACCTAAGGCGTGTTTC
LOC_Os04g54800
Os.35335.1.A1_s_at--721--10171Chr04:32363215..32363239 (25 bp)
TATAGCATGAACTTGTTAGTCACCC
LOC_Os04g54800
Target Sequence 
GAAAGGGTCAACAATCTGGTTAGATGTTCCATTGGATGCACTTGCAAGACGAATTGCTGCAGTAGGAACTGCTTCTCGGC
CCCTCTTGCATCAAGAATCTGGTGATCCTTATGCAAAGGCTTATGCAAAACTGACTGCACTTTTTGAACAAAGAATGGAC
TCATATGCTAATGCTGATGCCAGGGTTTCACTCGAACATATTGCAGTGAAACAAGGACATAGTAATGTGACGACACTTAC
ACCAAGTGCCATTGCTATTGAGGCATTGCTAAAGATGGAGAGCTTTCTTACTGAGAAGGCAATGATCAGAAACTAACCAC
TTTNGGGTGGTTAAAAGCACATCAACAAACAAAATCTCTTGTTNGTTCTGTTGTATTTATCGCATATACCTAAGGCGTGT
TTCTTNGTATAGCATGAACTTGTTAGTCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35335.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis