Browse Element(s) Details


OsAffx.22711.2.S1_at

Description gb:NM_184748.1
DB_XREF= gi:34896585
TID=OsAffx.22711.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0026A15.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3689011/11retrotransposon protein, putative, unclassified
LOC_Os04g546702/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36830Os.53883.1.S1_at11/113+20398804..20401902expressed protein
LOC_Os03g36860OsAffx.21171.5.S1_x_at11/113+20407701..20410041retrotransposon protein, putative, unclassified
LOC_Os03g36860OsAffx.21171.5.S1_at11/113+20407701..20410041retrotransposon protein, putative, unclassified
LOC_Os03g36870NANA3+20412699..20413484retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.4.S1_at11/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.4.S1_x_at11/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880Os.45173.1.S1_x_at3/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.3.S1_x_at1/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.2.S1_at11/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.2.S1_x_at11/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.1.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.4.A1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.20380.2.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.8420.1.S1_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22927.1.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36900Os.34669.1.S1_at11/113+20431255..20435189RNA-binding protein, putative, expressed
LOC_Os03g36910Os.36445.1.S1_at11/113+20439573..20442118methyltransferase, FkbM family protein, expressed
LOC_Os03g36920OsAffx.25389.1.S1_at11/113+20442594..20445866NB-ARC domain containing protein, expressed
LOC_Os03g36930Os.57569.1.S1_at6/113+20447050..20451521Eukaryotic initiation factor 4A-3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22711.2.S1_at--1017--3952Chr04:32304328..32304352 (25 bp)
CGGAGTTGGCGAGCCAGCTTGCCAC
LOC_Os04g54670
OsAffx.22711.2.S1_at--916--1691Chr03:20421730..20421754 (25 bp)
AGCCAGCTTGCCACGGCTCGGAGTA
LOC_Os03g36890
OsAffx.22711.2.S1_at--638--1551Chr03:20421726..20421750 (25 bp)
AGCTTGCCACGGCTCGGAGTACCCT
LOC_Os03g36890
OsAffx.22711.2.S1_at--1155--4552Chr04:32304152..32304176 (25 bp)
GCGCGCCGGGATAGCAAGCTTCCGC
LOC_Os04g54670
OsAffx.22711.2.S1_at--103--8031Chr03:20421476..20421500 (25 bp)
GGAGGTCGGCAAAACCATAAAGTGT
LOC_Os03g36890
OsAffx.22711.2.S1_at--606--2591Chr03:20421464..20421488 (25 bp)
AACCATAAAGTGTTCGTCGGCTTCT
LOC_Os03g36890
OsAffx.22711.2.S1_at--901--3551Chr03:20421461..20421485 (25 bp)
CATAAAGTGTTCGTCGGCTTCTTTG
LOC_Os03g36890
OsAffx.22711.2.S1_at--1135--2052Chr04:32303971..32303995 (25 bp)
ACTTCGAGCCGTGGCGTGCGCTTGA
NONE
OsAffx.22711.2.S1_at--1075--311Chr03:20421359..20421383 (25 bp)
AGATTTTCCCCCATGGACCGAAGCA
LOC_Os03g36890
OsAffx.22711.2.S1_at--712--8092Chr04:32303936..32303956 (21 bp)
GGACCGAAGCAAGGGCCCGGGTGCA
NONE
OsAffx.22711.2.S1_at--287--4092Chr04:32303892..32303915 (24 bp)
CGACGCGATCGTCTCGAGCTTCGAG
NONE
Target Sequence 
CGGAGTTGGCGAGCCAGCTTGCCACGGCTCGGAGTACCCTCGCCGACCTGGAGCGCCTGGTGCAGGATGAGGATGGGGAG
ATTGCGGCCCTCCGCCTCACCAACAAGCTCGGGCCCGGGCAGCTCTCCAACGCAGTCAACCGGCTGGAGCGCGCGGGGCG
TCGAGTCGGCATCTCCGCGCGCCGGGATAGCAAGCTTCCGCCCACACAGCCGGCACTCGCGCTTCGGCTGGACGGGCTGG
CGGCGGACCTGGAGAGGCTGGAGGAGGAGGTCGGCAAAACCATAAAGTGTTCGTCGGCTTCTTTGGCGCGGGCTGCGGTG
GAGCTGGTCCTTACGAGCCACCAAGCGCGCGACCCCGACTTCGAGCCGTGGCGTGCGCTTGAAGATTTTCCCCCATGGAC
CGAAGCAAGGGCCCGGGTGCAAGTCCGGGAGGCGGCCGACGCGATCGTCTCGAGCTTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22711.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis