Browse Element(s) Details


Os.36445.1.S1_at

Description gb:AK063379.1
DB_XREF= gi:32973397
TID=Os.36445.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0026A15.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-F07, full insert sequence.
FL= gb:AK063379.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3691011/11methyltransferase, FkbM family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36880OsAffx.21171.4.S1_at11/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.4.S1_x_at11/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880Os.45173.1.S1_x_at3/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.3.S1_x_at1/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.2.S1_at11/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.2.S1_x_at11/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.1.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.4.A1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.20380.2.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.8420.1.S1_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22927.1.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36900Os.34669.1.S1_at11/113+20431255..20435189RNA-binding protein, putative, expressed
LOC_Os03g36910Os.36445.1.S1_at11/113+20439573..20442118methyltransferase, FkbM family protein, expressed
LOC_Os03g36920OsAffx.25389.1.S1_at11/113+20442594..20445866NB-ARC domain containing protein, expressed
LOC_Os03g36930Os.57569.1.S1_at6/113+20447050..20451521Eukaryotic initiation factor 4A-3, putative, expressed
LOC_Os03g36944OsAffx.22709.1.S1_x_at11/113+20452370..20454531hypothetical protein
LOC_Os03g36944OsAffx.13203.1.S1_at2/113+20452370..20454531hypothetical protein
LOC_Os03g36960Os.30135.2.S1_x_at11/113+20455957..20456557expressed protein
LOC_Os03g36960Os.30135.1.S1_at11/113+20455957..20456557expressed protein
LOC_Os03g36970OsAffx.22708.5.S1_x_at11/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.5.S1_at11/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.2.S1_x_at5/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.1.S1_x_at2/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36980OsAffx.22708.3.S1_x_at11/113+20462201..20463295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36980OsAffx.22708.4.S1_x_at7/113+20462201..20463295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37000OsAffx.22706.1.S1_at11/113+20466138..20468283hypothetical protein
LOC_Os03g37000OsAffx.16865.1.S1_at1/113+20466138..20468283hypothetical protein
LOC_Os03g37000OsAffx.16865.1.S1_x_at1/113+20466138..20468283hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36445.1.S1_at--326--7411Chr03:20440147..20440171 (25 bp)
GTGTATCTCAACAGGGTGCAGGACC
LOC_Os03g36910
Os.36445.1.S1_at--305--1711Chr03:20440169..20440193 (25 bp)
ACCAGGTTGTGGTGTACCATGCCGC
LOC_Os03g36910
Os.36445.1.S1_at--1075--4211Chr03:20440190..20440214 (25 bp)
CCGCGGCTTCTGATCGAGTTGGGAA
LOC_Os03g36910
Os.36445.1.S1_at--66--10871Chr03:20441623..20441647 (25 bp)
TTGGACGACTCGACAACAGTGCTAT
LOC_Os03g36910
Os.36445.1.S1_at--1024--3451Chr03:20441639..20441663 (25 bp)
CAGTGCTATATCTGCAACCGGTGCA
LOC_Os03g36910
Os.36445.1.S1_at--552--9971Chr03:20441784..20441808 (25 bp)
TACCATGTTCTGAGAGGTGCATCAA
LOC_Os03g36910
Os.36445.1.S1_at--33--7411Chr03:20441830..20441854 (25 bp)
GTGATGCTCCCTACCTTATATATGA
LOC_Os03g36910
Os.36445.1.S1_at--892--2231Chr03:20441929..20441953 (25 bp)
ACAATCACTGTACACGTCATGGCAC
LOC_Os03g36910
Os.36445.1.S1_at--1038--5111Chr03:20441950..20441974 (25 bp)
GCACAGATGCTCACTGCACGAAAAA
LOC_Os03g36910
Os.36445.1.S1_at--818--1411Chr03:20442055..20442079 (25 bp)
AGAAAAGCATTTTCCCTCTCAGGCA
LOC_Os03g36910
Os.36445.1.S1_at--885--3751Chr03:20442070..20442094 (25 bp)
CTCTCAGGCAGCACTTTCATGAATA
LOC_Os03g36910
Target Sequence 
GTGTATCTCAACAGGGTGCAGGACCAGGTTGTGGTGTACCATGCCGCGGCTTCTGATCGAGTTGGGAACATCACAATGCA
TAAGGTGATTGGACGACTCGACAACAGTGCTATATCTGCAACCGGTGCAAAATTGGCTTTTAAAGCAAATGAAGAAATTG
CTGTTGAGGTTGCTACAATACCACTGGATGAAGTCATTCTAGATGCAGAGCGAGTGGTTTTGATCAAAATTGATGTTCAG
GGGTGGGAATACCATGTTCTGAGAGGTGCATCAAAGTTGCTTTCAAGGAGGAAAGGTGATGCTCCCTACCTTATATATGA
AGAAGATGAACGCCTACTGCAGGCAAGCAACAGTAGTGCACGAGAGATAAGGGCATTTCTTAGTAGTGTTGGTTACAATC
ACTGTACACGTCATGGCACAGATGCTCACTGCACGAAAAACTAGGCATGTGCTTTTTATTCATGTAAGTTGATGATCATC
TATGAACAGAGAAACATTCATATATGATGTGCTGATCTGTAGAAAAGCATTTTCCCTCTCAGGCAGCACTTTCATGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis