Browse Element(s) Details


Os.53883.1.S1_at

Description gb:AK100587.1
DB_XREF= gi:32985796
TID=Os.53883.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53883 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023106C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023106C19, full insert sequence.
FL= gb:AK100587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3683011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36790Os.19726.1.S1_x_at11/113+20375383..20380945tobamovirus multiplication protein 3, putative, expressed
LOC_Os03g36790Os.19726.1.S1_at11/113+20375383..20380945tobamovirus multiplication protein 3, putative, expressed
LOC_Os03g36810OsAffx.22712.1.S1_at11/113+20389518..20390136hypothetical protein
LOC_Os03g36830Os.53883.1.S1_at11/113+20398804..20401902expressed protein
LOC_Os03g36860OsAffx.21171.5.S1_x_at11/113+20407701..20410041retrotransposon protein, putative, unclassified
LOC_Os03g36860OsAffx.21171.5.S1_at11/113+20407701..20410041retrotransposon protein, putative, unclassified
LOC_Os03g36870NANA3+20412699..20413484retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.4.S1_at11/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.4.S1_x_at11/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880Os.45173.1.S1_x_at3/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.3.S1_x_at1/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.2.S1_at11/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.2.S1_x_at11/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.1.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.4.A1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.20380.2.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.8420.1.S1_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22927.1.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53883.1.S1_at--575--2731Chr03:20399612..20399636 (25 bp)
AAGCAACAGCAGGTTCTCTTATAGA
LOC_Os03g36830
Os.53883.1.S1_at--887--851Chr03:20399311..20399335 (25 bp)
ATGGCATTTCTTCTGATATTCTTGT
LOC_Os03g36830
Os.53883.1.S1_at--95--3291Chr03:20399248..20399272 (25 bp)
CAAAAACGCTGTACTATCTTACTAA
LOC_Os03g36830
Os.53883.1.S1_at--982--6431Chr03:20399171..20399195 (25 bp)
GATCATGGAGTTTACCAGCCAAGGA
LOC_Os03g36830
Os.53883.1.S1_at--458--3031Chr03:20399116..20399140 (25 bp)
AATCGTTTGCAGCTCGAGAAGCCCA
LOC_Os03g36830
Os.53883.1.S1_at--892--6891Chr03:20399018..20399042 (25 bp)
GTATAACTTCAGTGATGGTCGTACT
LOC_Os03g36830
Os.53883.1.S1_at--373--7771Chr03:20399002..20399026 (25 bp)
GGTCGTACTTTTGAACTCCTGATAT
LOC_Os03g36830
Os.53883.1.S1_at--732--911Chr03:20398959..20398983 (25 bp)
AGGCTGTAGCAGTCTTGCTAGTGAA
LOC_Os03g36830
Os.53883.1.S1_at--752--5371Chr03:20398894..20398918 (25 bp)
GAAGAAACTGCAGCTAGCACTCAGT
LOC_Os03g36830
Os.53883.1.S1_at--1031--1491Chr03:20398879..20398903 (25 bp)
AGCACTCAGTAGTCAGTCCCAGTAA
LOC_Os03g36830
Os.53883.1.S1_at--741--7071Chr03:20398858..20398882 (25 bp)
GTAATATATTTCTTTCCTTTCTAAT
LOC_Os03g36830
Target Sequence 
AAGCAACAGCAGGTTCTCTTATAGAAGATTGCATAGAAATCAGCAGAAAGAACTCAGGAAACAATGGCATTTCTTCTGAT
ATTCTTGTAAATGCAAGTACTGAATTGGTCAGGACAAAAGTTTCTACAAAAACGCTGTACTATCTTACTAAAATTTGGTT
GCTGAAAAATGCTCATGAAAGAGATGCAAGTGACATGAATAGAGATCATGGAGTTTACCAGCCAAGGAGGGAAGTTGGGA
CGAGGGAAATGATTGAGAAATCGTTTGCAGCTCGAGAAGCCCAAAAGGTTGAGTTGGAAAGAGTAATCAAACATCTGAAG
GAACAATTGAGGGATAGGAACCCTTCAAAACTTGATGTATAACTTCAGTGATGGTCGTACTTTTGAACTCCTGATATTAT
TTGTACAGTTATAATAGGCTGTAGCAGTCTTGCTAGTGAAAATGGGATCATAATTAAATAGCCTGTGGAAGGCCAGTAAT
GAAGAAACTGCAGCTAGCACTCAGTAGTCAGTCCCAGTAATATATTTCTTTCCTTTCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis