Browse Element(s) Details


Os.19726.1.S1_x_at

Description gb:AK068863.1
DB_XREF= gi:32978888
TID=Os.19726.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0026A15.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170P13, full insert sequence.
FL= gb:AK068863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3679011/11tobamovirus multiplication protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36760Os.53338.1.S1_at10/113+20346177..20351156expressed protein
LOC_Os03g36770OsAffx.13201.1.S1_at11/113+20354442..20354801hypothetical protein
LOC_Os03g36780Os.3921.1.S1_at10/113+20357676..20372137Elongation factor G, mitochondrial precursor, putative, expressed
LOC_Os03g36780OsAffx.13205.1.S1_at1/113+20357676..20372137Elongation factor G, mitochondrial precursor, putative, expressed
LOC_Os03g36790Os.19726.1.S1_x_at11/113+20375383..20380945tobamovirus multiplication protein 3, putative, expressed
LOC_Os03g36790Os.19726.1.S1_at11/113+20375383..20380945tobamovirus multiplication protein 3, putative, expressed
LOC_Os03g36810OsAffx.22712.1.S1_at11/113+20389518..20390136hypothetical protein
LOC_Os03g36830Os.53883.1.S1_at11/113+20398804..20401902expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046786biological_processviral replication complex formation and maintenance
GO:0005774cellular_componentvacuolar membrane
GO:0005515molecular_functionprotein binding
GO:0046790molecular_functionvirion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19726.1.S1_x_at--951--9231Chr03:20376009..20376033 (25 bp)
TCCATAGTTCAAAGATCCTGCACAA
LOC_Os03g36790
Os.19726.1.S1_x_at--939--2031Chr03:20375934..20375958 (25 bp)
ACTATACATCGCATTAATACGGTGA
LOC_Os03g36790
Os.19726.1.S1_x_at--17--8391Chr03:20375904..20375928 (25 bp)
GGCGATGTCATCATTTGATCCTGAT
LOC_Os03g36790
Os.19726.1.S1_x_at--712--6371Chr03:20375888..20375912 (25 bp)
GATCCTGATCTATCTCTTGAGGTTT
LOC_Os03g36790
Os.19726.1.S1_x_at--550--8771Chr03:20375757..20375780 (24 bp)
TGTTAACGGAGATACTGCCCTCTGC
LOC_Os03g36790
Os.19726.1.S1_x_at--214--2711Chr03:20375710..20375734 (25 bp)
AAGCTTCCACCGAAACGAGTATCAG
LOC_Os03g36790
Os.19726.1.S1_x_at--1087--6071Chr03:20375694..20375718 (25 bp)
GAGTATCAGCACAGTACCACCCTAT
LOC_Os03g36790
Os.19726.1.S1_x_at--92--1051Chr03:20375661..20375685 (25 bp)
AGGGCTGGTTTTGTCGTCACAAGCA
LOC_Os03g36790
Os.19726.1.S1_x_at--532--7691Chr03:20375573..20375597 (25 bp)
GGGTCATCTATGTCATGCTTCTGAT
LOC_Os03g36790
Os.19726.1.S1_x_at--614--7591Chr03:20375508..20375532 (25 bp)
GGGCTTTATATTTCTTGAGACCAGA
LOC_Os03g36790
Os.19726.1.S1_x_at--380--6291Chr03:20375474..20375498 (25 bp)
GATGATTTATACTTTGTTCTGCCTA
LOC_Os03g36790
Target Sequence 
TCCATAGTTCAAAGATCCTGCACAAAGGGGTGCTGTCATATTCCCATNTTNATCATTATTTTTCCCNTAAATTCATAACT
ATACATCGCATTAATACGGTGATAGGTGGCGATGTCATCATTTGATCCTGATCTATCTCTTGAGGTTTTGGATCATCCAA
TACTGGATTTCTTTTACTATATGTTAACGGAGATACTGCCCTCTGCTCTTGTCCTATTCATCCTCCGTAAGCTTCCACCG
AAACGAGTATCAGCACAGTACCACCCTATTCGTTANAAGGGCTGGTTTTGTCGTCACAAGCATTCCNAAAACTTGTTTCA
GAGCGAGAATTGTGATATTTGAGCTGAGCTTCAAGTAGTTTTGATGGGTCATCTATGTCATGCTTCTGATGTGGAAGAGG
TTTTTTTGTCCTCTCCTGACCCATTTTTCTGGGCTTTATATTTCTTGAGACCAGAATATTATCAGATGATTTATACTTTG
TTCTGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19726.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis