Browse Element(s) Details


Os.53338.1.S1_at

Description gb:AK072093.1
DB_XREF= gi:32982116
TID=Os.53338.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53338 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116B15, full insert sequence.
FL= gb:AK072093.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3676010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36730Os.4055.1.S1_at11/113+20318154..20324666OST3/OST6 family protein, putative, expressed
LOC_Os03g36730OsAffx.661.1.S1_x_at1/113+20318154..20324666OST3/OST6 family protein, putative, expressed
LOC_Os03g36740NANA3+20329970..20331315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36750Os.6292.1.S1_at10/113+20334252..20341704HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g36760Os.53338.1.S1_at10/113+20346177..20351156expressed protein
LOC_Os03g36770OsAffx.13201.1.S1_at11/113+20354442..20354801hypothetical protein
LOC_Os03g36780Os.3921.1.S1_at10/113+20357676..20372137Elongation factor G, mitochondrial precursor, putative, expressed
LOC_Os03g36780OsAffx.13205.1.S1_at1/113+20357676..20372137Elongation factor G, mitochondrial precursor, putative, expressed
LOC_Os03g36790Os.19726.1.S1_x_at11/113+20375383..20380945tobamovirus multiplication protein 3, putative, expressed
LOC_Os03g36790Os.19726.1.S1_at11/113+20375383..20380945tobamovirus multiplication protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53338.1.S1_at--1003--10331Chr03:20350569..20350593 (25 bp)
TTTATGCCCGACTTATCATCTGATC
LOC_Os03g36760
Os.53338.1.S1_at--1138--6851Chr03:20350714..20350738 (25 bp)
GTATTGTTTTTGCATCCAACCTGAA
LOC_Os03g36760
Os.53338.1.S1_at--13--6551Chr03:20350746..20350770 (25 bp)
GATTTTTGCCTCTGATAAGTGGAAT
LOC_Os03g36760
Os.53338.1.S1_at--893--5471Chr03:20350810..20350834 (25 bp)
GAACATTCAGCAGTAAGAGGTCCTT
LOC_Os03g36760
Os.53338.1.S1_at--954--6131Chr03:20350826..20350850 (25 bp)
GAGGTCCTTAAGATGGCCACTTGAT
LOC_Os03g36760
Os.53338.1.S1_at--212--831Chr03:20350854..20350878 (25 bp)
ATGGAAACCCTGTTGGTGCGATCAA
LOC_Os03g36760
Os.53338.1.S1_at--105--6051Chr03:20350888..20350912 (25 bp)
GAGATCTGTTGCTCTTCGGAAAAGA
LOC_Os03g36760
Os.53338.1.S1_at--875--7871Chr03:20350957..20350981 (25 bp)
GGTTAATATGCATACCTTTGAGCAC
LOC_Os03g36760
Os.53338.1.S1_at--184--7651Chr03:20351029..20351053 (25 bp)
GGGAGGAATCATTTATCTACTTGTT
LOC_Os03g36760
Os.53338.1.S1_at--881--3051NONE
AATCTGCTTTATCATCCACTTCTGA
NONE
Os.53338.1.S1_at--259--7991Chr03:20351130..20351154 (25 bp)
GGATGCAGAACTCTGCTTTAGCTAA
LOC_Os03g36760
Target Sequence 
TTTATGCCCGACTTATCATCTGATCATGGATTAGTGAATTGCATCATTGGTACTTCATGAAAGAAATTGTCGAGGAAGAC
TTGGGAGTGTGGTAGGTTGCAGGGAAGAACCGCATGTTGGTGAATGAGCTTGAAGCGTTGAATGTGTATTGTTTTTGCAT
CCAACCTGAAAGATGCAGATTTTTGCCTCTGATAAGTGGAATGCATTTAGTTGTTTTTTTGTCCATTGGATCGACATATA
TGAACATTCAGCAGTAAGAGGTCCTTAAGATGGCCACTTGATGACATGGAAACCCTGTTGGTGCGATCAACGTTTTGACG
AGATCTGTTGCTCTTCGGAAAAGAGAACTTTTTGAATTAATTTGCTTATCCGAAAGAAGTGTGTTCATGGTTAATATGCA
TACCTTTGAGCACAAATGACTTATGTTAAGGGTTGATTAACCACTTTTGTACTTTTTTTTGGGAGGAATCATTTATCTAC
TTGTTACACTGGTAATACTTGACCATTAACTGAAAACATGCAATCTGCTTTATCATCCACTTCTGAATTTTATATGTGAA
TGGATGCAGAACTCTGCTTTAGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis